RNA–Protein interactions for RNA: ENST00000444739.6

CASP4-203, Transcript of caspase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CASP4, Length 2,158 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4-203ENST00000444739 NISCHQ9Y2I1 1504 aa19.4■□□□□ 0.7
CASP4-203ENST00000444739 AEBP2Q6ZN18 517 aaPredicted RBP18.13■□□□□ 0.49
CASP4-203ENST00000444739 HRCP23327 699 aa16.99■□□□□ 0.31
CASP4-203ENST00000444739 CHIC1Q5VXU3 224 aa16.91■□□□□ 0.3
CASP4-203ENST00000444739 SHROOM4Q9ULL8 1493 aa16.91■□□□□ 0.3
CASP4-203ENST00000444739 SUPT5HO00267 1087 aaKnown RBP16.79■□□□□ 0.28
CASP4-203ENST00000444739 MYO15BQ96JP2 1530 aa16.75■□□□□ 0.27
CASP4-203ENST00000444739 PCGF6Q9BYE7 350 aa16.6■□□□□ 0.25
CASP4-203ENST00000444739 PPARGC1BQ86YN6 1023 aaKnown RBP16.56■□□□□ 0.24
CASP4-203ENST00000444739 ZCCHC6Q5VYS8 1495 aaKnown RBP16.52■□□□□ 0.24
CASP4-203ENST00000444739 DCAF1Q9Y4B6 1507 aa16.43■□□□□ 0.22
CASP4-203ENST00000444739 PELP1Q8IZL8 1130 aaKnown RBP16.27■□□□□ 0.2
CASP4-203ENST00000444739 CCDC180Q9P1Z9 1646 aa16.26■□□□□ 0.19
CASP4-203ENST00000444739 TRIM26Q12899 539 aaPredicted RBP16.16■□□□□ 0.18
CASP4-203ENST00000444739 LOC105371045A0A1W2PR82 267 aa16.14■□□□□ 0.17
CASP4-203ENST00000444739 ZEB1P37275 1124 aaPredicted RBP16.02■□□□□ 0.16
CASP4-203ENST00000444739 SCAF1Q9H7N4 1312 aaKnown RBP16■□□□□ 0.15
CASP4-203ENST00000444739 DCAF8L2P0C7V8 631 aa15.87■□□□□ 0.13
CASP4-203ENST00000444739 ABCC9O60706 1549 aa15.72■□□□□ 0.11
CASP4-203ENST00000444739 ACIN1Q9UKV3 1341 aaKnown RBP15.64■□□□□ 0.09
CASP4-203ENST00000444739 MYT1Q01538 1121 aa15.61■□□□□ 0.09
CASP4-203ENST00000444739 TRIM41Q8WV44 630 aa15.59■□□□□ 0.09
CASP4-203ENST00000444739 NEUROD1Q13562 356 aa15.58■□□□□ 0.08
CASP4-203ENST00000444739 RSF1Q96T23 1441 aaPredicted RBP15.55■□□□□ 0.08
CASP4-203ENST00000444739 RB1CC1Q8TDY2 1594 aa15.51■□□□□ 0.07
CASP4-203ENST00000444739 FAM9AQ8IZU1 332 aaPredicted RBP15.5■□□□□ 0.07
CASP4-203ENST00000444739 SENP3Q9H4L4 574 aaPredicted RBP15.48■□□□□ 0.07
CASP4-203ENST00000444739 GTF3C3Q9Y5Q9 886 aa15.47■□□□□ 0.07
CASP4-203ENST00000444739 CENPBP07199 599 aaPredicted RBP15.43■□□□□ 0.06
CASP4-203ENST00000444739 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.42■□□□□ 0.06
CASP4-203ENST00000444739 DIEXFQ68CQ4 756 aaKnown RBP15.4■□□□□ 0.06
CASP4-203ENST00000444739 CCER1Q8TC90 406 aaPredicted RBP15.38■□□□□ 0.05
CASP4-203ENST00000444739 EHMT2Q96KQ7 1210 aa15.36■□□□□ 0.05
CASP4-203ENST00000444739 SCRIBQ14160 1630 aa15.35■□□□□ 0.05
CASP4-203ENST00000444739 PHF23Q9BUL5 403 aaPredicted RBP15.25■□□□□ 0.03
CASP4-203ENST00000444739 WRNQ14191 1432 aaPredicted RBP eCLIP15.18■□□□□ 0.02
CASP4-203ENST00000444739 EIF4G1Q04637 1599 aaKnown RBP15.15■□□□□ 0.02
CASP4-203ENST00000444739 ZNF316A6NFI3 1004 aaPredicted RBP15.15■□□□□ 0.02
CASP4-203ENST00000444739 MROH2BQ7Z745 1585 aa15.12■□□□□ 0.01
CASP4-203ENST00000444739 CECR2Q9BXF3 1484 aa15.12■□□□□ 0.01
CASP4-203ENST00000444739 WIZO95785 1651 aa15.1■□□□□ 0.01
CASP4-203ENST00000444739 YTHDC1Q96MU7 727 aaKnown RBP15.05■□□□□ 0
CASP4-203ENST00000444739 CEP162Q5TB80 1403 aa15.05■□□□□ -0
CASP4-203ENST00000444739 BAZ1AQ9NRL2 1556 aaPredicted RBP15.03■□□□□ -0
CASP4-203ENST00000444739 MIER1Q8N108 512 aa15.01□□□□□ -0.01
CASP4-203ENST00000444739 TTBK1Q5TCY1 1321 aaPredicted RBP15.01□□□□□ -0.01
CASP4-203ENST00000444739 TNIKQ9UKE5 1360 aa14.97□□□□□ -0.01
CASP4-203ENST00000444739 CCDC88BA6NC98 1476 aa14.95□□□□□ -0.02
CASP4-203ENST00000444739 ABCC8Q09428 1581 aa14.94□□□□□ -0.02
CASP4-203ENST00000444739 NACADO15069 1562 aa14.9□□□□□ -0.02
CASP4-203ENST00000444739 SOGA1O94964 1423 aa14.87□□□□□ -0.03
CASP4-203ENST00000444739 EEA1Q15075 1411 aa14.85□□□□□ -0.03
CASP4-203ENST00000444739 CLSPNQ9HAW4 1339 aa14.84□□□□□ -0.03
CASP4-203ENST00000444739 TOP2AP11388 1531 aaKnown RBP14.83□□□□□ -0.04
CASP4-203ENST00000444739 GOLGA3Q08378 1498 aa14.8□□□□□ -0.04
CASP4-203ENST00000444739 RUSC2Q8N2Y8 1516 aa14.79□□□□□ -0.04
CASP4-203ENST00000444739 CSRNP3Q8WYN3 585 aa14.79□□□□□ -0.04
CASP4-203ENST00000444739 SMARCA2P51531 1590 aa14.79□□□□□ -0.04
CASP4-203ENST00000444739 SUPT16HQ9Y5B9 1047 aaKnown RBP14.78□□□□□ -0.04
CASP4-203ENST00000444739 UBTFP17480 764 aaKnown RBP14.77□□□□□ -0.04
CASP4-203ENST00000444739 HNRNPUL2Q1KMD3 747 aaKnown RBP14.77□□□□□ -0.05
CASP4-203ENST00000444739 TSHZ2Q9NRE2 1034 aa14.7□□□□□ -0.06
CASP4-203ENST00000444739 SMARCA4P51532 1647 aa14.69□□□□□ -0.06
CASP4-203ENST00000444739 ANP32EQ9BTT0 268 aa14.69□□□□□ -0.06
CASP4-203ENST00000444739 KIF21BO75037 1637 aa14.68□□□□□ -0.06
CASP4-203ENST00000444739 VPS8Q8N3P4 1428 aa14.66□□□□□ -0.06
CASP4-203ENST00000444739 CEP164Q9UPV0 1460 aa14.65□□□□□ -0.06
CASP4-203ENST00000444739 CLIP1P30622 1438 aa14.64□□□□□ -0.07
CASP4-203ENST00000444739 DHX57Q6P158 1386 aaKnown RBP14.6□□□□□ -0.07
CASP4-203ENST00000444739 BCL11AQ9H165 835 aa14.58□□□□□ -0.08
CASP4-203ENST00000444739 BAZ1BQ9UIG0 1483 aaKnown RBP14.57□□□□□ -0.08
CASP4-203ENST00000444739 SYNJ1O43426 1573 aa14.54□□□□□ -0.08
CASP4-203ENST00000444739 APLP2Q06481 763 aa14.53□□□□□ -0.08
CASP4-203ENST00000444739 RAPGEF2Q9Y4G8 1499 aa14.49□□□□□ -0.09
CASP4-203ENST00000444739 FOXD1Q16676 465 aa14.47□□□□□ -0.09
CASP4-203ENST00000444739 UNC13AQ9UPW8 1703 aa14.44□□□□□ -0.1
CASP4-203ENST00000444739 CUX2O14529 1486 aa14.44□□□□□ -0.1
CASP4-203ENST00000444739 KCNH8Q96L42 1107 aa14.43□□□□□ -0.1
CASP4-203ENST00000444739 RRBP1Q9P2E9 1410 aaKnown RBP14.41□□□□□ -0.1
CASP4-203ENST00000444739 BCANQ96GW7 911 aa14.39□□□□□ -0.11
CASP4-203ENST00000444739 ARAP1Q96P48 1450 aa14.39□□□□□ -0.11
CASP4-203ENST00000444739 PEG3Q9GZU2 1588 aa14.37□□□□□ -0.11
CASP4-203ENST00000444739 FKBP8Q14318 412 aa14.37□□□□□ -0.11
CASP4-203ENST00000444739 RBM19Q9Y4C8 960 aaKnown RBP14.35□□□□□ -0.11
CASP4-203ENST00000444739 RANGAP1P46060 587 aaPredicted RBP14.34□□□□□ -0.11
CASP4-203ENST00000444739 KANK4Q5T7N3 995 aaPredicted RBP14.34□□□□□ -0.11
CASP4-203ENST00000444739 ERICH3Q5RHP9 1530 aa14.34□□□□□ -0.11
CASP4-203ENST00000444739 MAPKBP1O60336 1514 aa14.32□□□□□ -0.12
CASP4-203ENST00000444739 TOP2BQ02880 1626 aa14.3□□□□□ -0.12
CASP4-203ENST00000444739 CCNB3Q8WWL7 1395 aa14.29□□□□□ -0.12
CASP4-203ENST00000444739 PRXQ9BXM0 1461 aa14.28□□□□□ -0.12
CASP4-203ENST00000444739 BIVM-ERCC5R4GMW8 1640 aa14.25□□□□□ -0.13
CASP4-203ENST00000444739 NEFLP07196 543 aa14.25□□□□□ -0.13
CASP4-203ENST00000444739 WDR97A6NE52 1622 aa14.24□□□□□ -0.13
CASP4-203ENST00000444739 RAB3GAP2Q9H2M9 1393 aa14.24□□□□□ -0.13
CASP4-203ENST00000444739 MSH5O43196 834 aa14.23□□□□□ -0.13
CASP4-203ENST00000444739 DDX10Q13206 875 aaKnown RBP14.23□□□□□ -0.13
CASP4-203ENST00000444739 PPP1R15AO75807 674 aaPredicted RBP14.22□□□□□ -0.13
CASP4-203ENST00000444739 CCER2I3L3R5 266 aa14.2□□□□□ -0.14
CASP4-203ENST00000444739 ITGAEP38570 1179 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms