Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 RNU6ATAC24P-201ENST00000516811 135 ntBASIC3.67□□□□□ -1.82
HSPG2P98160 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC3.67□□□□□ -1.82
HSPG2P98160 AC234771.5-201ENST00000600161 514 ntBASIC3.67□□□□□ -1.82
HSPG2P98160 AC012653.2-201ENST00000621880 420 ntBASIC3.67□□□□□ -1.82
HSPG2P98160 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC3.67□□□□□ -1.82
HSPG2P98160 AC087516.1-201ENST00000561236 2428 ntBASIC3.67□□□□□ -1.82
HSPG2P98160 MTHFR-205ENST00000376592 8378 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 AC010132.2-201ENST00000295493 1043 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
HSPG2P98160 ERMN-202ENST00000409216 746 ntTSL 4 BASIC3.66□□□□□ -1.82
HSPG2P98160 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC3.66□□□□□ -1.82
HSPG2P98160 NRBF2P2-201ENST00000413087 861 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC3.66□□□□□ -1.82
HSPG2P98160 OR5M12P-201ENST00000423388 929 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC3.66□□□□□ -1.82
HSPG2P98160 ANKRD54P1-201ENST00000433115 471 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 RPS23P9-201ENST00000448848 438 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC3.66□□□□□ -1.82
HSPG2P98160 OR7E157P-201ENST00000494376 911 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC3.66□□□□□ -1.82
HSPG2P98160 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 SUPT7L-201ENST00000337768 4488 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 AC005839.1-201ENST00000624148 3213 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 FKBP14-201ENST00000222803 4960 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 ZNFX1-202ENST00000371752 7212 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
HSPG2P98160 LRRC8B-206ENST00000640258 8034 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
HSPG2P98160 AC016583.1-201ENST00000624221 2431 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 U3.36-201ENST00000408418 213 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 RN7SKP27-201ENST00000410684 333 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 CYP4F29P-201ENST00000420685 446 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC3.66□□□□□ -1.82
HSPG2P98160 NUTF2P7-201ENST00000453086 375 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 AL050331.2-201ENST00000457319 421 ntTSL 3 BASIC3.66□□□□□ -1.82
HSPG2P98160 AP000662.1-201ENST00000530952 487 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC3.66□□□□□ -1.82
HSPG2P98160 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC3.66□□□□□ -1.82
HSPG2P98160 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC3.66□□□□□ -1.82
HSPG2P98160 AC063977.5-201ENST00000601044 974 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 AFF2-205ENST00000370460 13746 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
HSPG2P98160 SORD-201ENST00000267814 4909 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
HSPG2P98160 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC3.66□□□□□ -1.82
HSPG2P98160 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC3.66□□□□□ -1.82
HSPG2P98160 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 ALG13-224ENST00000610588 4175 ntTSL 2 BASIC3.66□□□□□ -1.82
HSPG2P98160 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC3.66□□□□□ -1.82
HSPG2P98160 AC005332.9-201ENST00000620266 2921 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 PRICKLE1-213ENST00000639589 5761 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
HSPG2P98160 TPR-201ENST00000367478 9708 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 TRIO-214ENST00000509967 4949 ntTSL 2 BASIC3.66□□□□□ -1.82
HSPG2P98160 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 ZEB2-245ENST00000638087 9339 ntTSL 5 BASIC3.66□□□□□ -1.82
HSPG2P98160 EGFR-201ENST00000275493 9821 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 PCDH15-226ENST00000613657 6329 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
HSPG2P98160 ZMYND8-204ENST00000355972 5542 ntAPPRIS ALT2 TSL 2 BASIC3.66□□□□□ -1.82
HSPG2P98160 GRIA4-206ENST00000525187 2822 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC3.66□□□□□ -1.82
HSPG2P98160 AC104837.2-201ENST00000427236 424 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC3.66□□□□□ -1.82
HSPG2P98160 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC3.66□□□□□ -1.82
HSPG2P98160 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC3.66□□□□□ -1.82
HSPG2P98160 AC092647.3-201ENST00000443044 633 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 AC109481.1-201ENST00000509173 282 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 SNORA70.11-201ENST00000515987 138 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 SNORA70.13-201ENST00000516116 138 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.66□□□□□ -1.82
HSPG2P98160 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC3.66□□□□□ -1.82
HSPG2P98160 MIR5096-201ENST00000583713 70 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 AC008745.1-201ENST00000604064 271 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 AL445528.2-201ENST00000620582 470 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC3.66□□□□□ -1.82
HSPG2P98160 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC3.66□□□□□ -1.82
HSPG2P98160 F13A1-201ENST00000264870 3999 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 PTGS1-207ENST00000619306 5051 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
HSPG2P98160 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC3.66□□□□□ -1.82
HSPG2P98160 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 AC062022.1-201ENST00000451026 1684 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 GUCY1A3-202ENST00000393832 4286 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 ING3-204ENST00000431467 1447 ntTSL 2 BASIC3.66□□□□□ -1.82
HSPG2P98160 BIVM-ERCC5-201ENST00000602836 5143 ntAPPRIS P5 TSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 AL136981.1-203ENST00000451452 3844 ntBASIC3.66□□□□□ -1.82
HSPG2P98160 ZNF772-201ENST00000343280 5419 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HSPG2P98160 ZC3HAV1-201ENST00000242351 7100 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.82
HSPG2P98160 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HSPG2P98160 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC3.65□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms