Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 AC079140.4-201ENST00000507448 529 ntBASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 AP001330.3-201ENST00000520123 633 ntBASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 AL049812.1-201ENST00000432563 2267 ntBASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
USH1CQ9Y6N9 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.65■□□□□ 0.74
USH1CQ9Y6N9 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.74
USH1CQ9Y6N9 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
USH1CQ9Y6N9 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
USH1CQ9Y6N9 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
USH1CQ9Y6N9 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
USH1CQ9Y6N9 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
USH1CQ9Y6N9 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.64■□□□□ 0.74
USH1CQ9Y6N9 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
USH1CQ9Y6N9 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
USH1CQ9Y6N9 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms