Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC22.92■■□□□ 1.26
CTDP1Q9Y5B0 AP006587.1-201ENST00000534129 1502 ntBASIC22.92■■□□□ 1.26
CTDP1Q9Y5B0 BID-203ENST00000399765 1879 ntTSL 2 BASIC22.92■■□□□ 1.26
CTDP1Q9Y5B0 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC22.91■■□□□ 1.26
CTDP1Q9Y5B0 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CTDP1Q9Y5B0 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
CTDP1Q9Y5B0 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CTDP1Q9Y5B0 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CTDP1Q9Y5B0 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CTDP1Q9Y5B0 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CTDP1Q9Y5B0 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC22.91■■□□□ 1.26
CTDP1Q9Y5B0 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CTDP1Q9Y5B0 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CTDP1Q9Y5B0 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC22.91■■□□□ 1.26
CTDP1Q9Y5B0 TSPY15P-201ENST00000457163 923 ntBASIC22.91■■□□□ 1.26
CTDP1Q9Y5B0 FDX2-207ENST00000494368 584 ntTSL 4 BASIC22.91■■□□□ 1.26
CTDP1Q9Y5B0 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC22.91■■□□□ 1.26
CTDP1Q9Y5B0 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CTDP1Q9Y5B0 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CTDP1Q9Y5B0 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC22.91■■□□□ 1.26
CTDP1Q9Y5B0 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC22.9■■□□□ 1.26
CTDP1Q9Y5B0 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CTDP1Q9Y5B0 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CTDP1Q9Y5B0 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC22.9■■□□□ 1.26
CTDP1Q9Y5B0 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC22.9■■□□□ 1.26
CTDP1Q9Y5B0 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC22.9■■□□□ 1.26
CTDP1Q9Y5B0 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC22.9■■□□□ 1.26
CTDP1Q9Y5B0 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC22.9■■□□□ 1.26
CTDP1Q9Y5B0 GRAP-204ENST00000573099 846 ntTSL 3 BASIC22.9■■□□□ 1.26
CTDP1Q9Y5B0 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC22.9■■□□□ 1.26
CTDP1Q9Y5B0 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CTDP1Q9Y5B0 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC22.9■■□□□ 1.26
CTDP1Q9Y5B0 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC22.89■■□□□ 1.26
CTDP1Q9Y5B0 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC22.89■■□□□ 1.26
CTDP1Q9Y5B0 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC22.89■■□□□ 1.26
CTDP1Q9Y5B0 SRI-203ENST00000419179 1307 ntTSL 2 BASIC22.89■■□□□ 1.26
CTDP1Q9Y5B0 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC22.89■■□□□ 1.26
CTDP1Q9Y5B0 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
CTDP1Q9Y5B0 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CTDP1Q9Y5B0 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC22.88■■□□□ 1.25
CTDP1Q9Y5B0 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CTDP1Q9Y5B0 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC22.88■■□□□ 1.25
CTDP1Q9Y5B0 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
CTDP1Q9Y5B0 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CTDP1Q9Y5B0 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CTDP1Q9Y5B0 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CTDP1Q9Y5B0 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC22.88■■□□□ 1.25
CTDP1Q9Y5B0 AC087499.1-201ENST00000418141 1075 ntBASIC22.88■■□□□ 1.25
CTDP1Q9Y5B0 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CTDP1Q9Y5B0 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CTDP1Q9Y5B0 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CTDP1Q9Y5B0 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
CTDP1Q9Y5B0 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
CTDP1Q9Y5B0 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
CTDP1Q9Y5B0 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC22.88■■□□□ 1.25
CTDP1Q9Y5B0 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 CR392000.1-201ENST00000624770 1228 ntBASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CTDP1Q9Y5B0 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CTDP1Q9Y5B0 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
CTDP1Q9Y5B0 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
CTDP1Q9Y5B0 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC22.86■■□□□ 1.25
CTDP1Q9Y5B0 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
CTDP1Q9Y5B0 AC138932.1-201ENST00000534164 6830 ntBASIC22.86■■□□□ 1.25
CTDP1Q9Y5B0 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CTDP1Q9Y5B0 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC22.86■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms