Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHKBP1Q8TBC3 AC004264.1-201ENST00000608354 794 ntBASIC20.82■□□□□ 0.92
SHKBP1Q8TBC3 AL353708.3-201ENST00000610272 989 ntBASIC20.82■□□□□ 0.92
SHKBP1Q8TBC3 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHKBP1Q8TBC3 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHKBP1Q8TBC3 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHKBP1Q8TBC3 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.82■□□□□ 0.92
SHKBP1Q8TBC3 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SHKBP1Q8TBC3 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHKBP1Q8TBC3 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 AL355355.2-201ENST00000442321 338 ntBASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 KRT18P21-201ENST00000515767 1272 ntBASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 AC073195.1-201ENST00000607241 877 ntBASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHKBP1Q8TBC3 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 AC012306.2-201ENST00000609350 630 ntBASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 AC097493.4-201ENST00000641197 219 ntBASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
SHKBP1Q8TBC3 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 KRT8P17-201ENST00000453110 1448 ntBASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 MIR1224-201ENST00000408193 85 ntBASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 FP700111.2-201ENST00000619190 1892 ntBASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 AL391422.3-201ENST00000603791 2761 ntBASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHKBP1Q8TBC3 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 LINC01521-201ENST00000504184 1943 ntBASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 LINC01006-201ENST00000333319 2292 ntBASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHKBP1Q8TBC3 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHKBP1Q8TBC3 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHKBP1Q8TBC3 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SHKBP1Q8TBC3 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHKBP1Q8TBC3 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms