Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AL592293.1-201ENST00000502889 1188 ntBASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 NARF-205ENST00000412079 1760 ntTSL 5 BASIC15.8■□□□□ 0.12
CLRN3Q8NCR9 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN3Q8NCR9 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 AC018695.7-201ENST00000624587 2492 ntBASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 USP49-202ENST00000373010 2446 ntTSL 5 BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 AF131216.4-201ENST00000638924 1588 ntBASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLRN3Q8NCR9 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms