Protein–RNA interactions for Protein: Q8IVM7

LINC00346, Putative uncharacterized protein encoded by LINC00346, humanhuman

Predictions only

Length 164 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00346Q8IVM7 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LINC00346Q8IVM7 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC17.51■□□□□ 0.39
LINC00346Q8IVM7 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LINC00346Q8IVM7 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LINC00346Q8IVM7 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LINC00346Q8IVM7 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LINC00346Q8IVM7 HLA-G-202ENST00000376815 851 ntBASIC17.51■□□□□ 0.39
LINC00346Q8IVM7 HLA-G-203ENST00000376818 1127 ntBASIC17.51■□□□□ 0.39
LINC00346Q8IVM7 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LINC00346Q8IVM7 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LINC00346Q8IVM7 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.51■□□□□ 0.39
LINC00346Q8IVM7 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LINC00346Q8IVM7 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LINC00346Q8IVM7 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LINC00346Q8IVM7 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LINC00346Q8IVM7 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
LINC00346Q8IVM7 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LINC00346Q8IVM7 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 BX276092.2-201ENST00000417668 665 ntBASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 CROCCP5-201ENST00000436658 830 ntBASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LINC00346Q8IVM7 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 RAP2CP1-201ENST00000605103 478 ntBASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
LINC00346Q8IVM7 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 TREX1-205ENST00000625293 1783 ntBASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 AC009237.14-201ENST00000609975 1594 ntBASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LINC00346Q8IVM7 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LINC00346Q8IVM7 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LINC00346Q8IVM7 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LINC00346Q8IVM7 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.47■□□□□ 0.39
LINC00346Q8IVM7 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LINC00346Q8IVM7 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LINC00346Q8IVM7 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.47■□□□□ 0.39
LINC00346Q8IVM7 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.47■□□□□ 0.39
LINC00346Q8IVM7 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LINC00346Q8IVM7 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LINC00346Q8IVM7 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LINC00346Q8IVM7 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms