Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
CCDC88AQ3V6T2 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC24.37■■□□□ 1.49
CCDC88AQ3V6T2 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
CCDC88AQ3V6T2 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
CCDC88AQ3V6T2 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
CCDC88AQ3V6T2 PP7080-204ENST00000510714 601 ntTSL 3 BASIC24.37■■□□□ 1.49
CCDC88AQ3V6T2 DBP-204ENST00000599385 709 ntTSL 3 BASIC24.37■■□□□ 1.49
CCDC88AQ3V6T2 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
CCDC88AQ3V6T2 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC24.37■■□□□ 1.49
CCDC88AQ3V6T2 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC24.37■■□□□ 1.49
CCDC88AQ3V6T2 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CCDC88AQ3V6T2 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CCDC88AQ3V6T2 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC24.37■■□□□ 1.49
CCDC88AQ3V6T2 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
CCDC88AQ3V6T2 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
CCDC88AQ3V6T2 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 AC091390.4-202ENST00000476426 537 ntBASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 AP005242.2-201ENST00000580065 1175 ntBASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 AC006128.1-201ENST00000624704 1661 ntBASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 PCED1CP-201ENST00000419887 785 ntBASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
CCDC88AQ3V6T2 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CCDC88AQ3V6T2 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC24.34■■□□□ 1.49
CCDC88AQ3V6T2 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CCDC88AQ3V6T2 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC24.34■■□□□ 1.49
CCDC88AQ3V6T2 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CCDC88AQ3V6T2 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC24.34■■□□□ 1.49
CCDC88AQ3V6T2 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CCDC88AQ3V6T2 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC24.34■■□□□ 1.49
CCDC88AQ3V6T2 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CCDC88AQ3V6T2 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC24.34■■□□□ 1.49
CCDC88AQ3V6T2 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
CCDC88AQ3V6T2 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
CCDC88AQ3V6T2 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
CCDC88AQ3V6T2 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC24.34■■□□□ 1.49
CCDC88AQ3V6T2 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC24.34■■□□□ 1.49
CCDC88AQ3V6T2 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CCDC88AQ3V6T2 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
CCDC88AQ3V6T2 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
CCDC88AQ3V6T2 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CCDC88AQ3V6T2 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC24.33■■□□□ 1.49
CCDC88AQ3V6T2 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.49
CCDC88AQ3V6T2 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC24.33■■□□□ 1.49
CCDC88AQ3V6T2 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC24.33■■□□□ 1.49
CCDC88AQ3V6T2 YBX1P10-201ENST00000444752 975 ntBASIC24.33■■□□□ 1.49
CCDC88AQ3V6T2 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC24.33■■□□□ 1.49
CCDC88AQ3V6T2 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC24.33■■□□□ 1.49
CCDC88AQ3V6T2 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC24.33■■□□□ 1.49
CCDC88AQ3V6T2 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC24.33■■□□□ 1.49
CCDC88AQ3V6T2 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CCDC88AQ3V6T2 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CCDC88AQ3V6T2 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC24.33■■□□□ 1.48
CCDC88AQ3V6T2 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
CCDC88AQ3V6T2 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CCDC88AQ3V6T2 FAM86EP-206ENST00000510506 987 ntBASIC24.32■■□□□ 1.48
CCDC88AQ3V6T2 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC24.32■■□□□ 1.48
CCDC88AQ3V6T2 VPS72-207ENST00000640458 689 ntTSL 5 BASIC24.32■■□□□ 1.48
CCDC88AQ3V6T2 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
CCDC88AQ3V6T2 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
CCDC88AQ3V6T2 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC24.32■■□□□ 1.48
CCDC88AQ3V6T2 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CCDC88AQ3V6T2 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CCDC88AQ3V6T2 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CCDC88AQ3V6T2 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
CCDC88AQ3V6T2 EGLN1P1-201ENST00000531623 762 ntBASIC24.32■■□□□ 1.48
CCDC88AQ3V6T2 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC24.32■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms