Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.35■□□□□ 0.69
PTCHD3Q3KNS1 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.35■□□□□ 0.69
PTCHD3Q3KNS1 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTCHD3Q3KNS1 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 AC098590.1-201ENST00000468126 897 ntBASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 PNMA6B-201ENST00000538162 1200 ntBASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PTCHD3Q3KNS1 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PTCHD3Q3KNS1 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PTCHD3Q3KNS1 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PTCHD3Q3KNS1 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.33■□□□□ 0.69
PTCHD3Q3KNS1 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.33■□□□□ 0.69
PTCHD3Q3KNS1 TMEM179-206ENST00000616017 1645 ntBASIC19.33■□□□□ 0.69
PTCHD3Q3KNS1 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PTCHD3Q3KNS1 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
PTCHD3Q3KNS1 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
PTCHD3Q3KNS1 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PTCHD3Q3KNS1 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PTCHD3Q3KNS1 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
PTCHD3Q3KNS1 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PTCHD3Q3KNS1 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD3Q3KNS1 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD3Q3KNS1 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.33■□□□□ 0.68
PTCHD3Q3KNS1 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD3Q3KNS1 RPS2P52-201ENST00000469610 820 ntBASIC19.33■□□□□ 0.68
PTCHD3Q3KNS1 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD3Q3KNS1 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.33■□□□□ 0.68
PTCHD3Q3KNS1 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD3Q3KNS1 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
PTCHD3Q3KNS1 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD3Q3KNS1 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
PTCHD3Q3KNS1 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD3Q3KNS1 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD3Q3KNS1 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD3Q3KNS1 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD3Q3KNS1 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PTCHD3Q3KNS1 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 AC125437.2-201ENST00000625180 2167 ntBASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 AC008403.3-201ENST00000598924 454 ntBASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 AC073648.6-201ENST00000641589 218 ntBASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
PTCHD3Q3KNS1 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTCHD3Q3KNS1 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms