Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HNF4AP41235 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HNF4AP41235 AC009237.14-201ENST00000609975 1594 ntBASIC19.19■□□□□ 0.66
HNF4AP41235 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HNF4AP41235 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
HNF4AP41235 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.18■□□□□ 0.66
HNF4AP41235 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
HNF4AP41235 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HNF4AP41235 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HNF4AP41235 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HNF4AP41235 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HNF4AP41235 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.18■□□□□ 0.66
HNF4AP41235 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HNF4AP41235 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HNF4AP41235 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.18■□□□□ 0.66
HNF4AP41235 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
HNF4AP41235 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.18■□□□□ 0.66
HNF4AP41235 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.18■□□□□ 0.66
HNF4AP41235 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HNF4AP41235 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
HNF4AP41235 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
HNF4AP41235 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HNF4AP41235 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
HNF4AP41235 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HNF4AP41235 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HNF4AP41235 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HNF4AP41235 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HNF4AP41235 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.17■□□□□ 0.66
HNF4AP41235 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.17■□□□□ 0.66
HNF4AP41235 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HNF4AP41235 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.17■□□□□ 0.66
HNF4AP41235 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HNF4AP41235 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HNF4AP41235 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
HNF4AP41235 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HNF4AP41235 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HNF4AP41235 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HNF4AP41235 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HNF4AP41235 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HNF4AP41235 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HNF4AP41235 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HNF4AP41235 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.16■□□□□ 0.66
HNF4AP41235 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HNF4AP41235 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HNF4AP41235 AP001271.2-201ENST00000624018 1556 ntBASIC19.16■□□□□ 0.66
HNF4AP41235 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HNF4AP41235 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.16■□□□□ 0.66
HNF4AP41235 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HNF4AP41235 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
HNF4AP41235 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HNF4AP41235 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
HNF4AP41235 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.16■□□□□ 0.66
HNF4AP41235 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.16■□□□□ 0.66
HNF4AP41235 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.16■□□□□ 0.66
HNF4AP41235 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.16■□□□□ 0.66
HNF4AP41235 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.16■□□□□ 0.66
HNF4AP41235 AC083880.1-201ENST00000608266 535 ntBASIC19.16■□□□□ 0.66
HNF4AP41235 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HNF4AP41235 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HNF4AP41235 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.16■□□□□ 0.66
HNF4AP41235 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HNF4AP41235 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.16■□□□□ 0.66
HNF4AP41235 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.16■□□□□ 0.66
HNF4AP41235 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HNF4AP41235 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HNF4AP41235 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HNF4AP41235 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.15■□□□□ 0.66
HNF4AP41235 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HNF4AP41235 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HNF4AP41235 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HNF4AP41235 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.15■□□□□ 0.66
HNF4AP41235 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HNF4AP41235 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.15■□□□□ 0.66
HNF4AP41235 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HNF4AP41235 MYC-209ENST00000641252 345 ntBASIC19.15■□□□□ 0.66
HNF4AP41235 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
HNF4AP41235 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HNF4AP41235 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.15■□□□□ 0.66
HNF4AP41235 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HNF4AP41235 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
HNF4AP41235 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HNF4AP41235 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.15■□□□□ 0.66
HNF4AP41235 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
HNF4AP41235 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HNF4AP41235 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.14■□□□□ 0.66
HNF4AP41235 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HNF4AP41235 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HNF4AP41235 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
HNF4AP41235 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HNF4AP41235 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HNF4AP41235 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HNF4AP41235 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.14■□□□□ 0.65
HNF4AP41235 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HNF4AP41235 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.14■□□□□ 0.65
HNF4AP41235 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.14■□□□□ 0.65
HNF4AP41235 AC073210.2-201ENST00000430369 194 ntBASIC19.14■□□□□ 0.65
HNF4AP41235 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.14■□□□□ 0.65
HNF4AP41235 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
HNF4AP41235 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
HNF4AP41235 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms