Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.9■□□□□ 0.78
CCNFP41002 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCNFP41002 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.78
CCNFP41002 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.89■□□□□ 0.78
CCNFP41002 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCNFP41002 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCNFP41002 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCNFP41002 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCNFP41002 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCNFP41002 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.89■□□□□ 0.77
CCNFP41002 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCNFP41002 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCNFP41002 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCNFP41002 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCNFP41002 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.89■□□□□ 0.77
CCNFP41002 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCNFP41002 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.89■□□□□ 0.77
CCNFP41002 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CCNFP41002 AC105036.2-201ENST00000569468 176 ntBASIC19.89■□□□□ 0.77
CCNFP41002 AC010980.2-201ENST00000587099 1412 ntBASIC19.89■□□□□ 0.77
CCNFP41002 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCNFP41002 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCNFP41002 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCNFP41002 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CCNFP41002 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCNFP41002 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCNFP41002 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCNFP41002 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCNFP41002 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCNFP41002 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCNFP41002 PTBP1P-201ENST00000554374 1601 ntBASIC19.88■□□□□ 0.77
CCNFP41002 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCNFP41002 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCNFP41002 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCNFP41002 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCNFP41002 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCNFP41002 AC090192.1-201ENST00000517740 490 ntBASIC19.88■□□□□ 0.77
CCNFP41002 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.88■□□□□ 0.77
CCNFP41002 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.88■□□□□ 0.77
CCNFP41002 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.88■□□□□ 0.77
CCNFP41002 CYP2T3P-201ENST00000601990 817 ntBASIC19.88■□□□□ 0.77
CCNFP41002 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCNFP41002 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCNFP41002 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCNFP41002 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
CCNFP41002 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.88■□□□□ 0.77
CCNFP41002 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCNFP41002 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.87■□□□□ 0.77
CCNFP41002 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.87■□□□□ 0.77
CCNFP41002 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCNFP41002 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCNFP41002 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.87■□□□□ 0.77
CCNFP41002 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
CCNFP41002 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCNFP41002 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCNFP41002 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCNFP41002 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCNFP41002 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCNFP41002 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCNFP41002 NCF1B-203ENST00000435988 1254 ntBASIC19.87■□□□□ 0.77
CCNFP41002 AC093787.1-201ENST00000450396 207 ntBASIC19.87■□□□□ 0.77
CCNFP41002 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCNFP41002 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.87■□□□□ 0.77
CCNFP41002 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCNFP41002 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCNFP41002 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.87■□□□□ 0.77
CCNFP41002 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCNFP41002 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCNFP41002 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCNFP41002 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCNFP41002 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCNFP41002 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.86■□□□□ 0.77
CCNFP41002 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.86■□□□□ 0.77
CCNFP41002 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
CCNFP41002 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCNFP41002 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
CCNFP41002 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.86■□□□□ 0.77
CCNFP41002 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCNFP41002 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
CCNFP41002 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCNFP41002 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCNFP41002 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCNFP41002 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CCNFP41002 KRT18P68-201ENST00000392293 1000 ntBASIC19.86■□□□□ 0.77
CCNFP41002 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.86■□□□□ 0.77
CCNFP41002 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.86■□□□□ 0.77
CCNFP41002 AC083906.2-201ENST00000511578 360 ntBASIC19.86■□□□□ 0.77
CCNFP41002 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.86■□□□□ 0.77
CCNFP41002 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.86■□□□□ 0.77
CCNFP41002 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCNFP41002 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.86■□□□□ 0.77
CCNFP41002 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
CCNFP41002 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCNFP41002 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.86■□□□□ 0.77
CCNFP41002 MKRN4P-201ENST00000444706 1521 ntBASIC19.86■□□□□ 0.77
CCNFP41002 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCNFP41002 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCNFP41002 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCNFP41002 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCNFP41002 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms