Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL8A1P27658 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL8A1P27658 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC17.33■□□□□ 0.36
COL8A1P27658 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
COL8A1P27658 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.33■□□□□ 0.36
COL8A1P27658 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.33■□□□□ 0.36
COL8A1P27658 SLC25A1P4-201ENST00000567977 778 ntBASIC17.33■□□□□ 0.36
COL8A1P27658 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.33■□□□□ 0.36
COL8A1P27658 STK25-234ENST00000535007 2459 ntTSL 2 BASIC17.33■□□□□ 0.36
COL8A1P27658 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL8A1P27658 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL8A1P27658 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL8A1P27658 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC17.33■□□□□ 0.36
COL8A1P27658 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.33■□□□□ 0.36
COL8A1P27658 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.33■□□□□ 0.36
COL8A1P27658 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17.32■□□□□ 0.36
COL8A1P27658 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL8A1P27658 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL8A1P27658 AC005332.1-201ENST00000577698 1310 ntBASIC17.32■□□□□ 0.36
COL8A1P27658 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL8A1P27658 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL8A1P27658 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.32■□□□□ 0.36
COL8A1P27658 AL359075.1-203ENST00000462729 1002 ntBASIC17.32■□□□□ 0.36
COL8A1P27658 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL8A1P27658 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL8A1P27658 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL8A1P27658 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
COL8A1P27658 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.31■□□□□ 0.36
COL8A1P27658 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL8A1P27658 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL8A1P27658 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
COL8A1P27658 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC17.31■□□□□ 0.36
COL8A1P27658 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
COL8A1P27658 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL8A1P27658 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL8A1P27658 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL8A1P27658 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL8A1P27658 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL8A1P27658 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL8A1P27658 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL8A1P27658 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL8A1P27658 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.31■□□□□ 0.36
COL8A1P27658 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.31■□□□□ 0.36
COL8A1P27658 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.31■□□□□ 0.36
COL8A1P27658 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.31■□□□□ 0.36
COL8A1P27658 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.31■□□□□ 0.36
COL8A1P27658 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
COL8A1P27658 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL8A1P27658 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.31■□□□□ 0.36
COL8A1P27658 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.31■□□□□ 0.36
COL8A1P27658 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC17.31■□□□□ 0.36
COL8A1P27658 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
COL8A1P27658 EP400NL-214ENST00000641289 2402 ntBASIC17.31■□□□□ 0.36
COL8A1P27658 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
COL8A1P27658 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL8A1P27658 FAM99A-202ENST00000538190 1989 ntBASIC17.31■□□□□ 0.36
COL8A1P27658 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL8A1P27658 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL8A1P27658 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC17.31■□□□□ 0.36
COL8A1P27658 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
COL8A1P27658 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
COL8A1P27658 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL8A1P27658 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL8A1P27658 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
COL8A1P27658 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL8A1P27658 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL8A1P27658 LINC00565-201ENST00000562710 2331 ntBASIC17.3■□□□□ 0.36
COL8A1P27658 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC17.3■□□□□ 0.36
COL8A1P27658 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL8A1P27658 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL8A1P27658 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
COL8A1P27658 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.3■□□□□ 0.36
COL8A1P27658 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL8A1P27658 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC17.3■□□□□ 0.36
COL8A1P27658 AC069148.1-201ENST00000608741 768 ntBASIC17.3■□□□□ 0.36
COL8A1P27658 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL8A1P27658 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
COL8A1P27658 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.3■□□□□ 0.36
COL8A1P27658 AC080038.3-201ENST00000623346 1952 ntBASIC17.29■□□□□ 0.36
COL8A1P27658 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
COL8A1P27658 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC17.29■□□□□ 0.36
COL8A1P27658 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL8A1P27658 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
COL8A1P27658 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC17.29■□□□□ 0.36
COL8A1P27658 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL8A1P27658 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.29■□□□□ 0.36
COL8A1P27658 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL8A1P27658 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL8A1P27658 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL8A1P27658 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL8A1P27658 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL8A1P27658 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL8A1P27658 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.29■□□□□ 0.36
COL8A1P27658 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.29■□□□□ 0.36
COL8A1P27658 AL671277.2-201ENST00000458060 996 ntBASIC17.29■□□□□ 0.36
COL8A1P27658 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.29■□□□□ 0.36
COL8A1P27658 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.29■□□□□ 0.36
COL8A1P27658 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.29■□□□□ 0.36
COL8A1P27658 AC116407.4-201ENST00000623319 1061 ntBASIC17.29■□□□□ 0.36
COL8A1P27658 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms