Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.61■□□□□ 0.41
LIMS4P0CW20 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMS4P0CW20 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMS4P0CW20 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMS4P0CW20 AC120498.9-201ENST00000339021 3867 ntBASIC17.6■□□□□ 0.41
LIMS4P0CW20 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMS4P0CW20 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMS4P0CW20 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMS4P0CW20 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
LIMS4P0CW20 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMS4P0CW20 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIMS4P0CW20 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIMS4P0CW20 TESC-206ENST00000541210 936 ntTSL 3 BASIC17.6■□□□□ 0.41
LIMS4P0CW20 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMS4P0CW20 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
LIMS4P0CW20 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIMS4P0CW20 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIMS4P0CW20 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
LIMS4P0CW20 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMS4P0CW20 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMS4P0CW20 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
LIMS4P0CW20 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
LIMS4P0CW20 CROCCP3-202ENST00000420820 1947 ntBASIC17.6■□□□□ 0.41
LIMS4P0CW20 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
LIMS4P0CW20 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMS4P0CW20 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMS4P0CW20 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIMS4P0CW20 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.6■□□□□ 0.41
LIMS4P0CW20 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.6■□□□□ 0.41
LIMS4P0CW20 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
LIMS4P0CW20 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMS4P0CW20 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
LIMS4P0CW20 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.59■□□□□ 0.41
LIMS4P0CW20 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIMS4P0CW20 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.59■□□□□ 0.41
LIMS4P0CW20 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
LIMS4P0CW20 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
LIMS4P0CW20 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMS4P0CW20 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMS4P0CW20 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC17.59■□□□□ 0.41
LIMS4P0CW20 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMS4P0CW20 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMS4P0CW20 CYP21A1P-202ENST00000354927 1481 ntBASIC17.59■□□□□ 0.41
LIMS4P0CW20 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.59■□□□□ 0.41
LIMS4P0CW20 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIMS4P0CW20 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIMS4P0CW20 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC17.59■□□□□ 0.41
LIMS4P0CW20 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIMS4P0CW20 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC17.59■□□□□ 0.41
LIMS4P0CW20 STOX2-205ENST00000513034 807 ntTSL 3 BASIC17.59■□□□□ 0.41
LIMS4P0CW20 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMS4P0CW20 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIMS4P0CW20 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
LIMS4P0CW20 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
LIMS4P0CW20 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.59■□□□□ 0.41
LIMS4P0CW20 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIMS4P0CW20 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.58■□□□□ 0.41
LIMS4P0CW20 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
LIMS4P0CW20 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIMS4P0CW20 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.58■□□□□ 0.41
LIMS4P0CW20 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIMS4P0CW20 KRT16P6-202ENST00000425692 1426 ntBASIC17.58■□□□□ 0.41
LIMS4P0CW20 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LIMS4P0CW20 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
LIMS4P0CW20 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC17.58■□□□□ 0.4
LIMS4P0CW20 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LIMS4P0CW20 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIMS4P0CW20 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIMS4P0CW20 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.58■□□□□ 0.4
LIMS4P0CW20 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.57■□□□□ 0.4
LIMS4P0CW20 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIMS4P0CW20 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.57■□□□□ 0.4
LIMS4P0CW20 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMS4P0CW20 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMS4P0CW20 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.57■□□□□ 0.4
LIMS4P0CW20 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMS4P0CW20 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMS4P0CW20 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIMS4P0CW20 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
LIMS4P0CW20 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.57■□□□□ 0.4
LIMS4P0CW20 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.57■□□□□ 0.4
LIMS4P0CW20 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC17.57■□□□□ 0.4
LIMS4P0CW20 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC17.57■□□□□ 0.4
LIMS4P0CW20 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC17.57■□□□□ 0.4
LIMS4P0CW20 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LIMS4P0CW20 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMS4P0CW20 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMS4P0CW20 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.57■□□□□ 0.4
LIMS4P0CW20 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LIMS4P0CW20 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIMS4P0CW20 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMS4P0CW20 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.57■□□□□ 0.4
LIMS4P0CW20 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LIMS4P0CW20 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIMS4P0CW20 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMS4P0CW20 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.56■□□□□ 0.4
LIMS4P0CW20 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMS4P0CW20 AC026471.1-201ENST00000564629 3026 ntBASIC17.56■□□□□ 0.4
LIMS4P0CW20 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMS4P0CW20 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms