Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MAX-217ENST00000557277 728 ntTSL 3 BASIC23.39■■□□□ 1.33
HMGB1P09429 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC23.39■■□□□ 1.33
HMGB1P09429 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC23.39■■□□□ 1.33
HMGB1P09429 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
HMGB1P09429 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
HMGB1P09429 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC23.39■■□□□ 1.33
HMGB1P09429 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC23.39■■□□□ 1.33
HMGB1P09429 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HMGB1P09429 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
HMGB1P09429 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
HMGB1P09429 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HMGB1P09429 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HMGB1P09429 HLA-L-209ENST00000420110 1011 ntBASIC23.38■■□□□ 1.33
HMGB1P09429 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
HMGB1P09429 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
HMGB1P09429 AC006557.6-201ENST00000623071 864 ntBASIC23.38■■□□□ 1.33
HMGB1P09429 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC23.38■■□□□ 1.33
HMGB1P09429 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC23.38■■□□□ 1.33
HMGB1P09429 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC23.38■■□□□ 1.33
HMGB1P09429 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
HMGB1P09429 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC23.38■■□□□ 1.33
HMGB1P09429 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
HMGB1P09429 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
HMGB1P09429 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC23.38■■□□□ 1.33
HMGB1P09429 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HMGB1P09429 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HMGB1P09429 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
HMGB1P09429 TREX1-205ENST00000625293 1783 ntBASIC23.37■■□□□ 1.33
HMGB1P09429 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
HMGB1P09429 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
HMGB1P09429 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC23.37■■□□□ 1.33
HMGB1P09429 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
HMGB1P09429 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
HMGB1P09429 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
HMGB1P09429 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC23.37■■□□□ 1.33
HMGB1P09429 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC23.37■■□□□ 1.33
HMGB1P09429 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
HMGB1P09429 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC23.37■■□□□ 1.33
HMGB1P09429 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
HMGB1P09429 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
HMGB1P09429 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC23.36■■□□□ 1.33
HMGB1P09429 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC23.36■■□□□ 1.33
HMGB1P09429 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC23.36■■□□□ 1.33
HMGB1P09429 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC23.36■■□□□ 1.33
HMGB1P09429 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
HMGB1P09429 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
HMGB1P09429 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
HMGB1P09429 ID1-201ENST00000376105 1233 ntBASIC23.36■■□□□ 1.33
HMGB1P09429 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
HMGB1P09429 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC23.36■■□□□ 1.33
HMGB1P09429 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC23.36■■□□□ 1.33
HMGB1P09429 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC23.36■■□□□ 1.33
HMGB1P09429 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC23.36■■□□□ 1.33
HMGB1P09429 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC23.36■■□□□ 1.33
HMGB1P09429 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC23.36■■□□□ 1.33
HMGB1P09429 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
HMGB1P09429 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
HMGB1P09429 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC23.35■■□□□ 1.33
HMGB1P09429 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
HMGB1P09429 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
HMGB1P09429 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
HMGB1P09429 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
HMGB1P09429 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
HMGB1P09429 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC23.35■■□□□ 1.33
HMGB1P09429 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
HMGB1P09429 AL355802.2-201ENST00000402069 882 ntBASIC23.35■■□□□ 1.33
HMGB1P09429 ABHD17AP6-201ENST00000458502 1044 ntBASIC23.35■■□□□ 1.33
HMGB1P09429 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC23.35■■□□□ 1.33
HMGB1P09429 OR2A1-AS1-207ENST00000486094 819 ntBASIC23.35■■□□□ 1.33
HMGB1P09429 SLC29A4P2-201ENST00000504749 1089 ntBASIC23.35■■□□□ 1.33
HMGB1P09429 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC23.35■■□□□ 1.33
HMGB1P09429 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC23.35■■□□□ 1.33
HMGB1P09429 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC23.35■■□□□ 1.33
HMGB1P09429 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
HMGB1P09429 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
HMGB1P09429 TFP1-202ENST00000475455 1573 ntBASIC23.35■■□□□ 1.33
HMGB1P09429 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
HMGB1P09429 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC23.34■■□□□ 1.33
HMGB1P09429 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC23.34■■□□□ 1.33
HMGB1P09429 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
HMGB1P09429 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HMGB1P09429 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
HMGB1P09429 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HMGB1P09429 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HMGB1P09429 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC23.34■■□□□ 1.33
HMGB1P09429 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC23.34■■□□□ 1.33
HMGB1P09429 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC23.34■■□□□ 1.33
HMGB1P09429 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
HMGB1P09429 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
HMGB1P09429 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
HMGB1P09429 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC23.34■■□□□ 1.33
HMGB1P09429 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC23.34■■□□□ 1.33
HMGB1P09429 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
HMGB1P09429 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HMGB1P09429 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
HMGB1P09429 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
HMGB1P09429 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HMGB1P09429 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HMGB1P09429 AL158211.5-201ENST00000623583 2518 ntBASIC23.33■■□□□ 1.33
HMGB1P09429 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms