Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RB1P06400 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RB1P06400 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.02■□□□□ 0.96
RB1P06400 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
RB1P06400 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
RB1P06400 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RB1P06400 TSPY5P-201ENST00000426936 936 ntBASIC21.02■□□□□ 0.96
RB1P06400 SLC25A1P2-201ENST00000430693 912 ntBASIC21.02■□□□□ 0.96
RB1P06400 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RB1P06400 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RB1P06400 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC21.02■□□□□ 0.96
RB1P06400 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.02■□□□□ 0.96
RB1P06400 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RB1P06400 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.96
RB1P06400 AC139887.4-201ENST00000607877 719 ntBASIC21.02■□□□□ 0.96
RB1P06400 AC011298.2-201ENST00000617989 482 ntBASIC21.02■□□□□ 0.96
RB1P06400 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.02■□□□□ 0.96
RB1P06400 AC010653.2-201ENST00000623505 997 ntBASIC21.02■□□□□ 0.96
RB1P06400 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RB1P06400 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RB1P06400 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.02■□□□□ 0.96
RB1P06400 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RB1P06400 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
RB1P06400 RCC2P6-201ENST00000526625 1557 ntBASIC21.02■□□□□ 0.95
RB1P06400 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RB1P06400 AC096733.2-201ENST00000609937 1394 ntBASIC21.01■□□□□ 0.95
RB1P06400 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.01■□□□□ 0.95
RB1P06400 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RB1P06400 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC21.01■□□□□ 0.95
RB1P06400 AC004951.3-201ENST00000418645 1148 ntBASIC21.01■□□□□ 0.95
RB1P06400 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.01■□□□□ 0.95
RB1P06400 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC21.01■□□□□ 0.95
RB1P06400 NMU-205ENST00000511469 756 ntTSL 3 BASIC21.01■□□□□ 0.95
RB1P06400 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC21.01■□□□□ 0.95
RB1P06400 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC21.01■□□□□ 0.95
RB1P06400 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RB1P06400 DBP-204ENST00000599385 709 ntTSL 3 BASIC21.01■□□□□ 0.95
RB1P06400 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RB1P06400 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RB1P06400 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RB1P06400 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC21.01■□□□□ 0.95
RB1P06400 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RB1P06400 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RB1P06400 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
RB1P06400 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
RB1P06400 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RB1P06400 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC21■□□□□ 0.95
RB1P06400 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21■□□□□ 0.95
RB1P06400 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RB1P06400 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC21■□□□□ 0.95
RB1P06400 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21■□□□□ 0.95
RB1P06400 METTL23-204ENST00000586752 904 ntTSL 2 BASIC21■□□□□ 0.95
RB1P06400 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC21■□□□□ 0.95
RB1P06400 AP000550.4-202ENST00000639755 178 ntBASIC21■□□□□ 0.95
RB1P06400 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
RB1P06400 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RB1P06400 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21■□□□□ 0.95
RB1P06400 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RB1P06400 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21■□□□□ 0.95
RB1P06400 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RB1P06400 AC018553.1-201ENST00000616682 1458 ntBASIC21■□□□□ 0.95
RB1P06400 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
RB1P06400 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21■□□□□ 0.95
RB1P06400 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
RB1P06400 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RB1P06400 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
RB1P06400 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RB1P06400 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.99■□□□□ 0.95
RB1P06400 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
RB1P06400 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RB1P06400 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
RB1P06400 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RB1P06400 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RB1P06400 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RB1P06400 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RB1P06400 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.99■□□□□ 0.95
RB1P06400 MFAP1P1-201ENST00000442257 1255 ntBASIC20.99■□□□□ 0.95
RB1P06400 COX11P1-201ENST00000489116 835 ntBASIC20.99■□□□□ 0.95
RB1P06400 YBX1P2-201ENST00000489612 999 ntBASIC20.99■□□□□ 0.95
RB1P06400 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.99■□□□□ 0.95
RB1P06400 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.99■□□□□ 0.95
RB1P06400 WDR88-203ENST00000592765 651 ntTSL 5 BASIC20.99■□□□□ 0.95
RB1P06400 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.99■□□□□ 0.95
RB1P06400 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.99■□□□□ 0.95
RB1P06400 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
RB1P06400 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
RB1P06400 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
RB1P06400 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RB1P06400 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
RB1P06400 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RB1P06400 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RB1P06400 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.98■□□□□ 0.95
RB1P06400 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.98■□□□□ 0.95
RB1P06400 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RB1P06400 FAM207BP-201ENST00000447172 505 ntBASIC20.98■□□□□ 0.95
RB1P06400 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.98■□□□□ 0.95
RB1P06400 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.98■□□□□ 0.95
RB1P06400 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC20.98■□□□□ 0.95
RB1P06400 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RB1P06400 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms