Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CHMP2AO43633 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CHMP2AO43633 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CHMP2AO43633 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CHMP2AO43633 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CHMP2AO43633 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CHMP2AO43633 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC22.29■■□□□ 1.16
CHMP2AO43633 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
CHMP2AO43633 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CHMP2AO43633 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC22.29■■□□□ 1.16
CHMP2AO43633 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
CHMP2AO43633 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC22.29■■□□□ 1.16
CHMP2AO43633 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC22.29■■□□□ 1.16
CHMP2AO43633 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC22.29■■□□□ 1.16
CHMP2AO43633 PHGDH-210ENST00000641115 1638 ntBASIC22.29■■□□□ 1.16
CHMP2AO43633 MOK-225ENST00000522867 1883 ntTSL 5 BASIC22.29■■□□□ 1.16
CHMP2AO43633 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CHMP2AO43633 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC22.29■■□□□ 1.16
CHMP2AO43633 AC093827.2-201ENST00000512654 315 ntBASIC22.29■■□□□ 1.16
CHMP2AO43633 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC22.29■■□□□ 1.16
CHMP2AO43633 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC22.29■■□□□ 1.16
CHMP2AO43633 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC22.29■■□□□ 1.16
CHMP2AO43633 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC22.29■■□□□ 1.16
CHMP2AO43633 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC22.29■■□□□ 1.16
CHMP2AO43633 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC22.29■■□□□ 1.16
CHMP2AO43633 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
CHMP2AO43633 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CHMP2AO43633 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CHMP2AO43633 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CHMP2AO43633 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC22.28■■□□□ 1.16
CHMP2AO43633 AC018553.1-201ENST00000616682 1458 ntBASIC22.28■■□□□ 1.16
CHMP2AO43633 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC22.28■■□□□ 1.16
CHMP2AO43633 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
CHMP2AO43633 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CHMP2AO43633 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CHMP2AO43633 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CHMP2AO43633 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC22.28■■□□□ 1.16
CHMP2AO43633 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC22.28■■□□□ 1.16
CHMP2AO43633 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC22.28■■□□□ 1.16
CHMP2AO43633 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC22.28■■□□□ 1.16
CHMP2AO43633 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC22.28■■□□□ 1.16
CHMP2AO43633 MAX-217ENST00000557277 728 ntTSL 3 BASIC22.28■■□□□ 1.16
CHMP2AO43633 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CHMP2AO43633 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC22.28■■□□□ 1.16
CHMP2AO43633 PCDHAC2-203ENST00000615316 3011 ntBASIC22.28■■□□□ 1.16
CHMP2AO43633 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC22.28■■□□□ 1.16
CHMP2AO43633 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CHMP2AO43633 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CHMP2AO43633 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CHMP2AO43633 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC22.28■■□□□ 1.16
CHMP2AO43633 AL691432.2-201ENST00000607222 2038 ntBASIC22.28■■□□□ 1.16
CHMP2AO43633 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC22.28■■□□□ 1.16
CHMP2AO43633 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHMP2AO43633 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHMP2AO43633 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHMP2AO43633 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHMP2AO43633 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC22.27■■□□□ 1.16
CHMP2AO43633 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHMP2AO43633 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHMP2AO43633 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHMP2AO43633 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHMP2AO43633 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
CHMP2AO43633 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CHMP2AO43633 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CHMP2AO43633 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC22.27■■□□□ 1.16
CHMP2AO43633 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC22.27■■□□□ 1.16
CHMP2AO43633 USP36-216ENST00000589424 970 ntTSL 5 BASIC22.27■■□□□ 1.16
CHMP2AO43633 AC116351.2-201ENST00000606540 1585 ntBASIC22.27■■□□□ 1.16
CHMP2AO43633 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHMP2AO43633 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHMP2AO43633 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHMP2AO43633 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC22.26■■□□□ 1.15
CHMP2AO43633 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
CHMP2AO43633 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CHMP2AO43633 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC22.26■■□□□ 1.15
CHMP2AO43633 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CHMP2AO43633 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC22.26■■□□□ 1.15
CHMP2AO43633 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CHMP2AO43633 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CHMP2AO43633 BAALC-201ENST00000297574 801 ntTSL 3 BASIC22.26■■□□□ 1.15
CHMP2AO43633 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC22.26■■□□□ 1.15
CHMP2AO43633 UBE2SP1-201ENST00000450587 669 ntBASIC22.26■■□□□ 1.15
CHMP2AO43633 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CHMP2AO43633 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
CHMP2AO43633 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CHMP2AO43633 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CHMP2AO43633 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
CHMP2AO43633 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
CHMP2AO43633 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC22.26■■□□□ 1.15
CHMP2AO43633 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
CHMP2AO43633 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC22.25■■□□□ 1.15
CHMP2AO43633 LINC01521-201ENST00000504184 1943 ntBASIC22.25■■□□□ 1.15
CHMP2AO43633 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC22.25■■□□□ 1.15
CHMP2AO43633 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC22.25■■□□□ 1.15
CHMP2AO43633 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CHMP2AO43633 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CHMP2AO43633 USP39-204ENST00000409766 2033 ntTSL 2 BASIC22.25■■□□□ 1.15
CHMP2AO43633 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
CHMP2AO43633 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CHMP2AO43633 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC22.25■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms