Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 IRS3P-201ENST00000223076 1006 ntBASIC17.27■□□□□ 0.36
SHISA3A0PJX4 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHISA3A0PJX4 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC17.27■□□□□ 0.36
SHISA3A0PJX4 DUX4L2-201ENST00000561772 1275 ntBASIC17.27■□□□□ 0.36
SHISA3A0PJX4 AL354811.1-201ENST00000610286 706 ntBASIC17.27■□□□□ 0.36
SHISA3A0PJX4 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC17.27■□□□□ 0.36
SHISA3A0PJX4 DUX4L6-201ENST00000626483 1275 ntBASIC17.27■□□□□ 0.36
SHISA3A0PJX4 DUX4L1-201ENST00000627662 1275 ntBASIC17.27■□□□□ 0.36
SHISA3A0PJX4 DUX4L8-201ENST00000629013 1275 ntBASIC17.27■□□□□ 0.36
SHISA3A0PJX4 DUX4L3-201ENST00000630187 1275 ntBASIC17.27■□□□□ 0.36
SHISA3A0PJX4 DUX4L7-201ENST00000630678 1275 ntBASIC17.27■□□□□ 0.36
SHISA3A0PJX4 DUX4L5-201ENST00000630834 1275 ntBASIC17.27■□□□□ 0.36
SHISA3A0PJX4 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHISA3A0PJX4 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SHISA3A0PJX4 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.27■□□□□ 0.36
SHISA3A0PJX4 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHISA3A0PJX4 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.27■□□□□ 0.35
SHISA3A0PJX4 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHISA3A0PJX4 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
SHISA3A0PJX4 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHISA3A0PJX4 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHISA3A0PJX4 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHISA3A0PJX4 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.27■□□□□ 0.35
SHISA3A0PJX4 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
SHISA3A0PJX4 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHISA3A0PJX4 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 AL133373.2-201ENST00000623187 2828 ntBASIC17.26■□□□□ 0.35
SHISA3A0PJX4 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 AC006333.2-201ENST00000607957 2099 ntBASIC17.26■□□□□ 0.35
SHISA3A0PJX4 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 AC104187.1-201ENST00000607510 612 ntBASIC17.26■□□□□ 0.35
SHISA3A0PJX4 AL356652.1-201ENST00000615962 565 ntBASIC17.26■□□□□ 0.35
SHISA3A0PJX4 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 MIR6084-201ENST00000622012 110 ntBASIC17.26■□□□□ 0.35
SHISA3A0PJX4 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHISA3A0PJX4 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 EBPL-204ENST00000378272 766 ntTSL 3 BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 MIR939-201ENST00000401314 82 ntBASIC17.25■□□□□ 0.35
SHISA3A0PJX4 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 AP001160.3-201ENST00000601484 763 ntBASIC17.25■□□□□ 0.35
SHISA3A0PJX4 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.25■□□□□ 0.35
SHISA3A0PJX4 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SHISA3A0PJX4 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHISA3A0PJX4 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHISA3A0PJX4 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
SHISA3A0PJX4 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.24■□□□□ 0.35
SHISA3A0PJX4 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHISA3A0PJX4 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHISA3A0PJX4 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHISA3A0PJX4 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHISA3A0PJX4 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC17.24■□□□□ 0.35
SHISA3A0PJX4 AC105265.2-201ENST00000467189 838 ntBASIC17.24■□□□□ 0.35
SHISA3A0PJX4 AF213884.3-201ENST00000563833 479 ntBASIC17.24■□□□□ 0.35
SHISA3A0PJX4 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC17.24■□□□□ 0.35
SHISA3A0PJX4 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.24■□□□□ 0.35
SHISA3A0PJX4 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHISA3A0PJX4 AL390961.4-201ENST00000623958 2535 ntBASIC17.24■□□□□ 0.35
SHISA3A0PJX4 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.24■□□□□ 0.35
SHISA3A0PJX4 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHISA3A0PJX4 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms