Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AP001554.1-201ENST00000604533 376 ntBASIC6.56□□□□□ -1.36
MSX2P35548 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC6.56□□□□□ -1.36
MSX2P35548 OR6L2P-201ENST00000608207 925 ntBASIC6.56□□□□□ -1.36
MSX2P35548 AC244153.1-204ENST00000615582 401 ntTSL 2 BASIC6.56□□□□□ -1.36
MSX2P35548 OR1N1-202ENST00000619659 939 ntBASIC6.56□□□□□ -1.36
MSX2P35548 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC6.56□□□□□ -1.36
MSX2P35548 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC6.56□□□□□ -1.36
MSX2P35548 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC6.56□□□□□ -1.36
MSX2P35548 CHRM5-202ENST00000557872 2687 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 AC015969.1-201ENST00000366218 1416 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.56□□□□□ -1.36
MSX2P35548 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
MSX2P35548 CCNC-204ENST00000482541 1704 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 AC011504.1-201ENST00000623331 4103 ntBASIC6.56□□□□□ -1.36
MSX2P35548 CASC19-255ENST00000641733 1385 ntBASIC6.56□□□□□ -1.36
MSX2P35548 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC6.56□□□□□ -1.36
MSX2P35548 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
MSX2P35548 ANGPT1-206ENST00000520734 1526 ntTSL 2 BASIC6.55□□□□□ -1.36
MSX2P35548 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
MSX2P35548 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC6.55□□□□□ -1.36
MSX2P35548 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
MSX2P35548 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC6.55□□□□□ -1.36
MSX2P35548 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
MSX2P35548 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
MSX2P35548 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
MSX2P35548 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
MSX2P35548 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
MSX2P35548 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC6.55□□□□□ -1.36
MSX2P35548 IFT22-201ENST00000315322 1130 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
MSX2P35548 RNA5SP483-201ENST00000363431 118 ntBASIC6.55□□□□□ -1.36
MSX2P35548 RNU6-618P-201ENST00000363518 112 ntBASIC6.55□□□□□ -1.36
MSX2P35548 XAGE5-202ENST00000375501 415 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
MSX2P35548 CST13P-201ENST00000376992 428 ntBASIC6.55□□□□□ -1.36
MSX2P35548 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
MSX2P35548 RNU6-40P-201ENST00000384254 107 ntBASIC6.55□□□□□ -1.36
MSX2P35548 AC133644.1-201ENST00000398171 937 ntBASIC6.55□□□□□ -1.36
MSX2P35548 RFKP1-201ENST00000400940 428 ntBASIC6.55□□□□□ -1.36
MSX2P35548 AL049545.1-201ENST00000401856 572 ntBASIC6.55□□□□□ -1.36
MSX2P35548 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC6.55□□□□□ -1.36
MSX2P35548 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX2P35548 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX2P35548 AL713922.1-201ENST00000416477 747 ntBASIC6.55□□□□□ -1.36
MSX2P35548 AL121917.1-202ENST00000424434 367 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX2P35548 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX2P35548 SNX19-202ENST00000426933 888 ntTSL 2 BASIC6.55□□□□□ -1.36
MSX2P35548 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC6.55□□□□□ -1.36
MSX2P35548 AC096638.2-201ENST00000434965 711 ntBASIC6.55□□□□□ -1.36
MSX2P35548 ATP5C1P1-201ENST00000441945 895 ntBASIC6.55□□□□□ -1.36
MSX2P35548 AC007000.2-201ENST00000442564 487 ntBASIC6.55□□□□□ -1.36
MSX2P35548 KATNBL1P3-201ENST00000443475 909 ntBASIC6.55□□□□□ -1.36
MSX2P35548 AC074257.1-201ENST00000446340 585 ntTSL 4 BASIC6.55□□□□□ -1.36
MSX2P35548 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX2P35548 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX2P35548 RPL7P61-201ENST00000451721 751 ntBASIC6.55□□□□□ -1.36
MSX2P35548 AC021491.1-201ENST00000502300 349 ntTSL 5 BASIC6.55□□□□□ -1.36
MSX2P35548 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX2P35548 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX2P35548 AP003033.1-201ENST00000527244 415 ntBASIC6.55□□□□□ -1.36
MSX2P35548 EMP1-206ENST00000537612 505 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX2P35548 HNRNPC-226ENST00000556628 1156 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
MSX2P35548 AC103740.1-204ENST00000557994 570 ntTSL 4 BASIC6.55□□□□□ -1.36
MSX2P35548 AC010333.1-201ENST00000563116 563 ntTSL 4 BASIC6.55□□□□□ -1.36
MSX2P35548 AC096708.2-201ENST00000577676 512 ntBASIC6.55□□□□□ -1.36
MSX2P35548 CT45A3-202ENST00000598716 855 ntAPPRIS P1 TSL 3 BASIC6.55□□□□□ -1.36
MSX2P35548 AC010320.1-201ENST00000599775 578 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX2P35548 AC011497.2-201ENST00000600255 639 ntBASIC6.55□□□□□ -1.36
MSX2P35548 AC008385.1-201ENST00000604421 355 ntBASIC6.55□□□□□ -1.36
MSX2P35548 AL445647.2-201ENST00000615170 130 ntBASIC6.55□□□□□ -1.36
MSX2P35548 AC231759.1-201ENST00000616455 597 ntBASIC6.55□□□□□ -1.36
MSX2P35548 AL354718.1-201ENST00000619764 589 ntBASIC6.55□□□□□ -1.36
MSX2P35548 PFN1P2-202ENST00000621347 397 ntBASIC6.55□□□□□ -1.36
MSX2P35548 AL353898.2-201ENST00000623000 255 ntBASIC6.55□□□□□ -1.36
MSX2P35548 SNX18P10-201ENST00000625014 519 ntBASIC6.55□□□□□ -1.36
MSX2P35548 LGI1-209ENST00000627699 664 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX2P35548 AC119674.1-209ENST00000642031 997 ntBASIC6.55□□□□□ -1.36
MSX2P35548 CREM-218ENST00000460270 1416 ntTSL 2 BASIC6.55□□□□□ -1.36
MSX2P35548 HELLS-206ENST00000394045 2699 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
MSX2P35548 TM2D2-203ENST00000456845 3295 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
MSX2P35548 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
MSX2P35548 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC6.55□□□□□ -1.36
MSX2P35548 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC6.55□□□□□ -1.36
MSX2P35548 TOPORSLP1-201ENST00000467693 2102 ntBASIC6.55□□□□□ -1.36
MSX2P35548 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC6.55□□□□□ -1.36
MSX2P35548 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
MSX2P35548 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX2P35548 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX2P35548 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
MSX2P35548 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
MSX2P35548 AL356361.1-201ENST00000400943 1459 ntBASIC6.54□□□□□ -1.36
MSX2P35548 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC6.54□□□□□ -1.36
MSX2P35548 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
MSX2P35548 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.54□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms