Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 BTK-209ENST00000618050 2417 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A1P20908 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A1P20908 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
COL5A1P20908 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A1P20908 SHPRH-203ENST00000367505 7201 ntAPPRIS P2 TSL 5 BASIC6.13□□□□□ -1.43
COL5A1P20908 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A1P20908 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A1P20908 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC6.13□□□□□ -1.43
COL5A1P20908 SLC2A14-201ENST00000340749 3699 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
COL5A1P20908 OR52B3P-201ENST00000314715 928 ntBASIC6.13□□□□□ -1.43
COL5A1P20908 KRTAP2-5P-201ENST00000446109 396 ntBASIC6.13□□□□□ -1.43
COL5A1P20908 RN7SL273P-201ENST00000481561 299 ntBASIC6.13□□□□□ -1.43
COL5A1P20908 RN7SL193P-201ENST00000491708 276 ntBASIC6.13□□□□□ -1.43
COL5A1P20908 RNA5SP434-201ENST00000516647 121 ntBASIC6.13□□□□□ -1.43
COL5A1P20908 RNA5SP271-201ENST00000516700 88 ntBASIC6.13□□□□□ -1.43
COL5A1P20908 AP000662.1-201ENST00000530952 487 ntBASIC6.13□□□□□ -1.43
COL5A1P20908 DCN-209ENST00000546745 1026 ntTSL 3 BASIC6.13□□□□□ -1.43
COL5A1P20908 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC6.13□□□□□ -1.43
COL5A1P20908 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A1P20908 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A1P20908 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A1P20908 AC005332.4-201ENST00000592752 579 ntBASIC6.13□□□□□ -1.43
COL5A1P20908 DIO2-201ENST00000422005 6272 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A1P20908 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
COL5A1P20908 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A1P20908 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC6.12□□□□□ -1.43
COL5A1P20908 LIPA-203ENST00000371837 2513 ntTSL 2 BASIC6.12□□□□□ -1.43
COL5A1P20908 EBF1-203ENST00000517373 2277 ntTSL 5 BASIC6.12□□□□□ -1.43
COL5A1P20908 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A1P20908 CLASP1-208ENST00000455322 5660 ntTSL 5 BASIC6.12□□□□□ -1.43
COL5A1P20908 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A1P20908 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC6.12□□□□□ -1.43
COL5A1P20908 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A1P20908 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC6.12□□□□□ -1.43
COL5A1P20908 NUP107-201ENST00000229179 6457 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A1P20908 RECQL-204ENST00000444129 3702 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
COL5A1P20908 PKP4-217ENST00000628904 3856 ntTSL 5 BASIC6.12□□□□□ -1.43
COL5A1P20908 ZMYND8-221ENST00000619049 4027 ntTSL 5 BASIC6.12□□□□□ -1.43
COL5A1P20908 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A1P20908 TEK-202ENST00000406359 3935 ntTSL 2 BASIC6.12□□□□□ -1.43
COL5A1P20908 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
COL5A1P20908 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC6.12□□□□□ -1.43
COL5A1P20908 RNA5SP178-201ENST00000410380 128 ntBASIC6.12□□□□□ -1.43
COL5A1P20908 RN7SKP286-201ENST00000410894 299 ntBASIC6.12□□□□□ -1.43
COL5A1P20908 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A1P20908 AL157884.1-201ENST00000424561 454 ntBASIC6.12□□□□□ -1.43
COL5A1P20908 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC6.12□□□□□ -1.43
COL5A1P20908 IGKV1OR10-1-201ENST00000442306 329 ntBASIC6.12□□□□□ -1.43
COL5A1P20908 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC6.12□□□□□ -1.43
COL5A1P20908 IGKV1OR22-5-201ENST00000458718 354 ntBASIC6.12□□□□□ -1.43
COL5A1P20908 TSACC-207ENST00000470342 601 ntTSL 2 BASIC6.12□□□□□ -1.43
COL5A1P20908 AC008410.1-201ENST00000483777 339 ntBASIC6.12□□□□□ -1.43
COL5A1P20908 SNORA58-201ENST00000505219 137 ntBASIC6.12□□□□□ -1.43
COL5A1P20908 RN7SKP238-201ENST00000516483 249 ntBASIC6.12□□□□□ -1.43
COL5A1P20908 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A1P20908 AP001858.2-201ENST00000536213 601 ntBASIC6.12□□□□□ -1.43
COL5A1P20908 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC6.12□□□□□ -1.43
COL5A1P20908 TPRX1P1-201ENST00000557620 319 ntBASIC6.12□□□□□ -1.43
COL5A1P20908 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
COL5A1P20908 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A1P20908 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC6.12□□□□□ -1.43
COL5A1P20908 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A1P20908 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A1P20908 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A1P20908 AC005332.9-201ENST00000620266 2921 ntBASIC6.12□□□□□ -1.43
COL5A1P20908 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A1P20908 NRXN3-201ENST00000281127 8504 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A1P20908 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A1P20908 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC6.12□□□□□ -1.43
COL5A1P20908 AL359694.2-201ENST00000567753 1615 ntBASIC6.12□□□□□ -1.43
COL5A1P20908 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
COL5A1P20908 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A1P20908 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A1P20908 AL359922.2-201ENST00000581788 3017 ntBASIC6.12□□□□□ -1.43
COL5A1P20908 AC107983.2-201ENST00000425211 4735 ntTSL 2 BASIC6.12□□□□□ -1.43
COL5A1P20908 AC078880.4-201ENST00000617627 1749 ntBASIC6.11□□□□□ -1.43
COL5A1P20908 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A1P20908 NT5DC1-201ENST00000319550 6923 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A1P20908 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.11□□□□□ -1.43
COL5A1P20908 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
COL5A1P20908 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
COL5A1P20908 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC6.11□□□□□ -1.43
COL5A1P20908 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A1P20908 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
COL5A1P20908 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC6.11□□□□□ -1.43
COL5A1P20908 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC6.11□□□□□ -1.43
COL5A1P20908 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC6.11□□□□□ -1.43
COL5A1P20908 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC6.11□□□□□ -1.43
COL5A1P20908 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC6.11□□□□□ -1.43
COL5A1P20908 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC6.11□□□□□ -1.43
COL5A1P20908 AC092121.1-201ENST00000569452 202 ntBASIC6.11□□□□□ -1.43
COL5A1P20908 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC6.11□□□□□ -1.43
COL5A1P20908 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC6.11□□□□□ -1.43
COL5A1P20908 KCNMA1-212ENST00000406533 5639 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
COL5A1P20908 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC6.11□□□□□ -1.43
COL5A1P20908 AC025809.2-201ENST00000625085 1802 ntBASIC6.11□□□□□ -1.43
COL5A1P20908 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC6.11□□□□□ -1.43
COL5A1P20908 TMTC1-201ENST00000256062 8805 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A1P20908 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A1P20908 CYFIP1-208ENST00000617928 6793 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms