Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
VCX3AQ9NNX9 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 TMEM179-206ENST00000616017 1645 ntBASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 CLTA-206ENST00000466396 695 ntTSL 2 BASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VCX3AQ9NNX9 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
VCX3AQ9NNX9 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VCX3AQ9NNX9 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
VCX3AQ9NNX9 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VCX3AQ9NNX9 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 DUX4L18-201ENST00000553347 1267 ntBASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 AC137630.3-201ENST00000607245 391 ntBASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
VCX3AQ9NNX9 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 U85056.1-201ENST00000616429 682 ntBASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 AC241377.3-202ENST00000626088 1088 ntBASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 AC241585.3-202ENST00000628937 1088 ntBASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 AC245100.8-202ENST00000629247 1058 ntBASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 LINC01465-201ENST00000408887 1940 ntBASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VCX3AQ9NNX9 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 AC009113.1-201ENST00000570267 2443 ntBASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms