Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.588e-11■■□□□ 11.7
U2AF1Q01081 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.568e-11■■□□□ 11.7
U2AF1Q01081 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.58e-6■■□□□ 11.7
U2AF1Q01081 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.471e-7■■□□□ 11.7
U2AF1Q01081 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.471e-7■■□□□ 11.7
U2AF1Q01081 PGGHG-205ENST00000474221 4418 ntTSL 217.93■□□□□ 0.468e-6■■□□□ 11.7
U2AF1Q01081 ARFGAP1-206ENST00000518601 905 ntTSL 517.52■□□□□ 0.48e-11■■□□□ 11.7
U2AF1Q01081 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC17.5■□□□□ 0.398e-11■■□□□ 11.7
U2AF1Q01081 C14orf159-205ENST00000517306 2294 ntTSL 1 (best)17.43■□□□□ 0.388e-6■■□□□ 11.7
U2AF1Q01081 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC17.28■□□□□ 0.368e-6■■□□□ 11.7
U2AF1Q01081 TFR2-206ENST00000465294 2763 ntTSL 216.93■□□□□ 0.32e-8■■□□□ 11.7
U2AF1Q01081 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.292e-8■■□□□ 11.7
U2AF1Q01081 PGGHG-203ENST00000409548 3687 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.268e-6■■□□□ 11.7
U2AF1Q01081 C14orf159-203ENST00000412671 2591 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.238e-6■■□□□ 11.7
U2AF1Q01081 SCFD1-201ENST00000311943 2016 ntTSL 216.2■□□□□ 0.188e-6■■□□□ 11.7
U2AF1Q01081 PGGHG-202ENST00000409479 3062 ntTSL 5 BASIC16.05■□□□□ 0.168e-6■■□□□ 11.7
U2AF1Q01081 C14orf159-219ENST00000521077 2719 ntTSL 1 (best) BASIC15.79■□□□□ 0.128e-6■■□□□ 11.7
U2AF1Q01081 SCFD1-206ENST00000484733 2308 ntTSL 515.32■□□□□ 0.048e-6■■□□□ 11.7
U2AF1Q01081 C14orf159-226ENST00000523461 2435 ntTSL 215.16■□□□□ 0.028e-6■■□□□ 11.7
U2AF1Q01081 C14orf159-201ENST00000256324 2967 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.078e-6■■□□□ 11.7
U2AF1Q01081 C14orf159-234ENST00000525393 2471 ntTSL 5 BASIC14.58□□□□□ -0.088e-6■■□□□ 11.7
U2AF1Q01081 C14orf159-204ENST00000428926 2538 ntAPPRIS P3 TSL 2 BASIC14.4□□□□□ -0.18e-6■■□□□ 11.7
U2AF1Q01081 C14orf159-230ENST00000523837 2814 ntTSL 514.26□□□□□ -0.138e-6■■□□□ 11.7
U2AF1Q01081 C14orf159-223ENST00000522322 2856 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.178e-6■■□□□ 11.7
U2AF1Q01081 C14orf159-229ENST00000523816 2764 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.28e-6■■□□□ 11.7
U2AF1Q01081 C14orf159-217ENST00000520328 2687 ntTSL 2 BASIC13.18□□□□□ -0.38e-6■■□□□ 11.7
U2AF1Q01081 SCFD1-215ENST00000555259 1553 ntTSL 1 (best)12.82□□□□□ -0.368e-6■■□□□ 11.7
U2AF1Q01081 C14orf159-228ENST00000523771 2976 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.398e-6■■□□□ 11.7
U2AF1Q01081 C14orf159-211ENST00000518868 3075 ntAPPRIS ALT1 TSL 2 BASIC12.11□□□□□ -0.478e-6■■□□□ 11.7
U2AF1Q01081 SCFD1-202ENST00000396629 2021 ntTSL 2 BASIC11.23□□□□□ -0.618e-6■■□□□ 11.7
U2AF1Q01081 SCFD1-222ENST00000556768 1829 ntTSL 1 (best)9.77□□□□□ -0.848e-6■■□□□ 11.7
U2AF1Q01081 SCFD1-212ENST00000554486 819 ntTSL 38.32□□□□□ -1.088e-6■■□□□ 11.7
U2AF1Q01081 CD2AP-202ENST00000463175 707 ntTSL 26.65□□□□□ -1.348e-6■■□□□ 11.7
U2AF1Q01081 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.388e-6■■□□□ 11.7
U2AF1Q01081 STXBP5-202ENST00000367475 521 ntTSL 56.45□□□□□ -1.388e-6■■□□□ 11.7
U2AF1Q01081 STXBP5-205ENST00000392291 791 ntTSL 55.07□□□□□ -1.68e-6■■□□□ 11.7
U2AF1Q01081 STRN3-204ENST00000554124 785 ntTSL 44.87□□□□□ -1.638e-6■■□□□ 11.7
U2AF1Q01081 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC4.79□□□□□ -1.648e-6■■□□□ 11.7
U2AF1Q01081 SCFD1-204ENST00000463622 1943 ntTSL 24.7□□□□□ -1.668e-6■■□□□ 11.7
U2AF1Q01081 CD2AP-204ENST00000479857 404 ntTSL 34.39□□□□□ -1.718e-6■■□□□ 11.7
U2AF1Q01081 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.862e-7■■□□□ 11.6
U2AF1Q01081 SLC17A9-202ENST00000370351 3580 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.272e-7■■□□□ 11.6
U2AF1Q01081 SLC17A9-207ENST00000488738 3992 ntTSL 216.55■□□□□ 0.242e-7■■□□□ 11.6
U2AF1Q01081 ARID1A-215ENST00000636958 1388 ntTSL 519.9■□□□□ 0.786e-7■■□□□ 11.6
U2AF1Q01081 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC29.11■■■□□ 2.254e-7■■□□□ 11.6
U2AF1Q01081 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.664e-7■■□□□ 11.6
U2AF1Q01081 SLC39A14-204ENST00000381237 4641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.124e-7■■□□□ 11.6
U2AF1Q01081 SLC39A14-203ENST00000359741 4641 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.064e-7■■□□□ 11.6
U2AF1Q01081 ASNS-210ENST00000448127 579 ntTSL 211.92□□□□□ -0.51e-13■■□□□ 11.6
U2AF1Q01081 HNRNPH1-207ENST00000503105 559 ntTSL 323.54■■□□□ 1.366e-9■■□□□ 11.6
U2AF1Q01081 HNRNPH1-211ENST00000504779 792 ntTSL 517.91■□□□□ 0.466e-9■■□□□ 11.6
U2AF1Q01081 NKTR-212ENST00000472127 796 ntTSL 27.96□□□□□ -1.147e-8■■□□□ 11.6
U2AF1Q01081 CASC3-205ENST00000577605 714 ntTSL 39.37□□□□□ -0.911e-9■■□□□ 11.6
U2AF1Q01081 OGT-211ENST00000498566 601 ntTSL 36.06□□□□□ -1.442e-11■■□□□ 11.6
U2AF1Q01081 GCKR-202ENST00000411584 789 ntTSL 39.39□□□□□ -0.911e-6■■□□□ 11.6
U2AF1Q01081 GLS-213ENST00000479552 2016 ntTSL 1 (best)32.79■■■□□ 2.844e-13■■□□□ 11.6
U2AF1Q01081 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC24.96■■□□□ 1.594e-13■■□□□ 11.6
U2AF1Q01081 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC24.57■■□□□ 1.524e-13■■□□□ 11.6
U2AF1Q01081 GLS-211ENST00000469774 557 ntTSL 36.85□□□□□ -1.314e-13■■□□□ 11.6
U2AF1Q01081 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC24.42■■□□□ 1.51e-6■■□□□ 11.6
U2AF1Q01081 EPB41L2-204ENST00000392427 3369 ntTSL 1 (best) BASIC17.34■□□□□ 0.371e-6■■□□□ 11.6
U2AF1Q01081 EPB41L2-205ENST00000445890 3677 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.351e-6■■□□□ 11.6
U2AF1Q01081 EPB41L2-203ENST00000368128 4456 ntAPPRIS P3 TSL 5 BASIC15.74■□□□□ 0.111e-6■■□□□ 11.6
U2AF1Q01081 EPB41L2-224ENST00000530481 3914 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.071e-6■■□□□ 11.6
U2AF1Q01081 EPB41L2-232ENST00000628542 4247 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.191e-6■■□□□ 11.6
U2AF1Q01081 EPB41L2-201ENST00000337057 4457 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.271e-6■■□□□ 11.6
U2AF1Q01081 EPB41L2-216ENST00000527411 4186 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.31e-6■■□□□ 11.6
U2AF1Q01081 ARGLU1-204ENST00000472226 1336 ntTSL 27.52□□□□□ -1.211e-8■■□□□ 11.6
U2AF1Q01081 NUP214-213ENST00000525384 840 ntTSL 1 (best)8.8□□□□□ -15e-7■■□□□ 11.6
U2AF1Q01081 DDX39A-214ENST00000590556 575 ntTSL 225.59■■□□□ 1.692e-6■■□□□ 11.6
U2AF1Q01081 DDX39A-212ENST00000590260 988 ntTSL 224.44■■□□□ 1.52e-6■■□□□ 11.6
U2AF1Q01081 DDX39A-221ENST00000593026 657 ntTSL 319.97■□□□□ 0.792e-6■■□□□ 11.6
U2AF1Q01081 DDX39A-213ENST00000590315 566 ntTSL 517.19■□□□□ 0.342e-6■■□□□ 11.6
U2AF1Q01081 DDX39A-210ENST00000589675 829 ntTSL 314.9□□□□□ -0.022e-6■■□□□ 11.6
U2AF1Q01081 DDX39A-203ENST00000454233 922 ntTSL 3 BASIC14.29□□□□□ -0.122e-6■■□□□ 11.6
U2AF1Q01081 CASC3-209ENST00000583902 557 ntTSL 212.2□□□□□ -0.464e-7■■□□□ 11.6
U2AF1Q01081 NEDD9-201ENST00000379433 3341 ntTSL 1 (best) BASIC14.18□□□□□ -0.141e-6■■□□□ 11.6
U2AF1Q01081 NEDD9-204ENST00000448183 4934 ntTSL 1 (best)9.79□□□□□ -0.841e-6■■□□□ 11.6
U2AF1Q01081 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC9.56□□□□□ -0.881e-6■■□□□ 11.6
U2AF1Q01081 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC8.76□□□□□ -1.011e-6■■□□□ 11.6
U2AF1Q01081 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC8.45□□□□□ -1.061e-6■■□□□ 11.6
U2AF1Q01081 FN1-217ENST00000471193 496 ntTSL 315.49■□□□□ 0.072e-9■■□□□ 11.6
U2AF1Q01081 UBR4-207ENST00000425413 2954 ntTSL 215.13■□□□□ 0.011e-7■■□□□ 11.6
U2AF1Q01081 HNRNPH1-229ENST00000518548 527 ntTSL 23.16□□□□□ -1.92e-9■■□□□ 11.5
U2AF1Q01081 MED24-221ENST00000580008 957 ntTSL 1 (best)24.88■■□□□ 1.572e-6■■□□□ 11.5
U2AF1Q01081 MED24-225ENST00000580885 1963 ntTSL 521.65■■□□□ 1.062e-6■■□□□ 11.5
U2AF1Q01081 MED24-206ENST00000428757 1105 ntTSL 521.58■■□□□ 1.052e-6■■□□□ 11.5
U2AF1Q01081 MED24-213ENST00000535071 2441 ntTSL 519.41■□□□□ 0.72e-6■■□□□ 11.5
U2AF1Q01081 MED24-232ENST00000585249 511 ntTSL 417.11■□□□□ 0.332e-6■■□□□ 11.5
U2AF1Q01081 MED24-217ENST00000577488 572 ntTSL 416.25■□□□□ 0.192e-6■■□□□ 11.5
U2AF1Q01081 MED24-214ENST00000535508 3334 ntTSL 215.91■□□□□ 0.142e-6■■□□□ 11.5
U2AF1Q01081 MED24-212ENST00000501516 3037 ntTSL 5 BASIC15.73■□□□□ 0.112e-6■■□□□ 11.5
U2AF1Q01081 MED24-204ENST00000394128 3479 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.062e-6■■□□□ 11.5
U2AF1Q01081 MED24-201ENST00000356271 3446 ntTSL 2 BASIC14.6□□□□□ -0.072e-6■■□□□ 11.5
U2AF1Q01081 MED24-203ENST00000394127 3456 ntTSL 2 BASIC14.25□□□□□ -0.132e-6■■□□□ 11.5
U2AF1Q01081 MED24-202ENST00000394126 3896 ntTSL 1 (best) BASIC13.41□□□□□ -0.262e-6■■□□□ 11.5
U2AF1Q01081 MED24-219ENST00000578901 728 ntTSL 1 (best)10.93□□□□□ -0.662e-6■■□□□ 11.5
U2AF1Q01081 MED24-234ENST00000614384 454 ntTSL 1 (best) BASIC10.71□□□□□ -0.692e-6■■□□□ 11.5
U2AF1Q01081 MKLN1-212ENST00000498778 3380 ntTSL 1 (best)4.14□□□□□ -1.751e-6■■□□□ 11.5
U2AF1Q01081 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.111e-9■■□□□ 11.5
Retrieved 100 of 10,096 protein–RNA pairs in 225.1 ms