Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC14.88□□□□□ -0.03
FOXA3P55318 BCL2-203ENST00000589955 5011 ntBASIC14.88□□□□□ -0.03
FOXA3P55318 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC14.88□□□□□ -0.03
FOXA3P55318 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC14.88□□□□□ -0.03
FOXA3P55318 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC14.88□□□□□ -0.03
FOXA3P55318 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC14.88□□□□□ -0.03
FOXA3P55318 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC14.88□□□□□ -0.03
FOXA3P55318 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC14.88□□□□□ -0.03
FOXA3P55318 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC14.88□□□□□ -0.03
FOXA3P55318 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC14.88□□□□□ -0.03
FOXA3P55318 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
FOXA3P55318 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC14.88□□□□□ -0.03
FOXA3P55318 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
FOXA3P55318 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
FOXA3P55318 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
FOXA3P55318 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 AC018470.1-201ENST00000624790 3129 ntBASIC14.88□□□□□ -0.03
FOXA3P55318 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA3P55318 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA3P55318 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC14.87□□□□□ -0.03
FOXA3P55318 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA3P55318 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA3P55318 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC14.87□□□□□ -0.03
FOXA3P55318 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA3P55318 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC14.87□□□□□ -0.03
FOXA3P55318 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC14.87□□□□□ -0.03
FOXA3P55318 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC14.87□□□□□ -0.03
FOXA3P55318 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
FOXA3P55318 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC14.87□□□□□ -0.03
FOXA3P55318 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA3P55318 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA3P55318 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
FOXA3P55318 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA3P55318 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA3P55318 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA3P55318 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC14.87□□□□□ -0.03
FOXA3P55318 QDPR-206ENST00000508623 601 ntTSL 3 BASIC14.87□□□□□ -0.03
FOXA3P55318 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC14.87□□□□□ -0.03
FOXA3P55318 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC14.87□□□□□ -0.03
FOXA3P55318 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA3P55318 SF1-220ENST00000626028 704 ntTSL 2 BASIC14.87□□□□□ -0.03
FOXA3P55318 RARRES2P11-201ENST00000635158 484 ntBASIC14.87□□□□□ -0.03
FOXA3P55318 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
FOXA3P55318 LINC01465-201ENST00000408887 1940 ntBASIC14.87□□□□□ -0.03
FOXA3P55318 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
FOXA3P55318 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA3P55318 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA3P55318 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
FOXA3P55318 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC14.87□□□□□ -0.03
FOXA3P55318 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA3P55318 AC079598.2-202ENST00000546624 1451 ntBASIC14.87□□□□□ -0.03
FOXA3P55318 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA3P55318 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA3P55318 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
FOXA3P55318 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
FOXA3P55318 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA3P55318 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA3P55318 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA3P55318 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA3P55318 RARRES2P1-201ENST00000474487 481 ntBASIC14.86□□□□□ -0.03
FOXA3P55318 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
FOXA3P55318 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA3P55318 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA3P55318 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC14.86□□□□□ -0.03
FOXA3P55318 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA3P55318 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA3P55318 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA3P55318 DPP3P2-201ENST00000416030 1696 ntBASIC14.86□□□□□ -0.03
FOXA3P55318 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
FOXA3P55318 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA3P55318 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC14.86□□□□□ -0.03
FOXA3P55318 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA3P55318 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA3P55318 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA3P55318 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC14.86□□□□□ -0.03
FOXA3P55318 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA3P55318 AC116050.2-201ENST00000612102 1779 ntBASIC14.85□□□□□ -0.03
FOXA3P55318 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC14.85□□□□□ -0.03
FOXA3P55318 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA3P55318 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC14.85□□□□□ -0.03
FOXA3P55318 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA3P55318 PWWP2AP1-201ENST00000429776 2273 ntBASIC14.85□□□□□ -0.03
FOXA3P55318 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA3P55318 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC14.85□□□□□ -0.03
FOXA3P55318 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA3P55318 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
FOXA3P55318 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
FOXA3P55318 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA3P55318 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms