Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VCPP55072 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VCPP55072 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.24■□□□□ 0.99
VCPP55072 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VCPP55072 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.24■□□□□ 0.99
VCPP55072 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VCPP55072 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VCPP55072 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VCPP55072 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.24■□□□□ 0.99
VCPP55072 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VCPP55072 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.23■□□□□ 0.99
VCPP55072 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VCPP55072 AL162377.1-201ENST00000618844 1793 ntBASIC21.23■□□□□ 0.99
VCPP55072 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
VCPP55072 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
VCPP55072 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VCPP55072 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
VCPP55072 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VCPP55072 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
VCPP55072 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VCPP55072 PRKY-204ENST00000533551 1019 ntBASIC21.23■□□□□ 0.99
VCPP55072 TPM1-226ENST00000560959 925 ntTSL 2 BASIC21.23■□□□□ 0.99
VCPP55072 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC21.23■□□□□ 0.99
VCPP55072 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC21.23■□□□□ 0.99
VCPP55072 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
VCPP55072 AC124016.1-201ENST00000609552 612 ntBASIC21.23■□□□□ 0.99
VCPP55072 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC21.23■□□□□ 0.99
VCPP55072 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VCPP55072 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.23■□□□□ 0.99
VCPP55072 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.23■□□□□ 0.99
VCPP55072 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.23■□□□□ 0.99
VCPP55072 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
VCPP55072 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.23■□□□□ 0.99
VCPP55072 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.23■□□□□ 0.99
VCPP55072 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VCPP55072 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
VCPP55072 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VCPP55072 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
VCPP55072 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VCPP55072 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VCPP55072 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.22■□□□□ 0.99
VCPP55072 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC21.22■□□□□ 0.99
VCPP55072 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.22■□□□□ 0.99
VCPP55072 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
VCPP55072 AL353708.3-201ENST00000610272 989 ntBASIC21.22■□□□□ 0.99
VCPP55072 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
VCPP55072 AL512408.1-201ENST00000569378 2000 ntBASIC21.22■□□□□ 0.99
VCPP55072 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
VCPP55072 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VCPP55072 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VCPP55072 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC21.22■□□□□ 0.99
VCPP55072 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
VCPP55072 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.22■□□□□ 0.99
VCPP55072 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VCPP55072 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VCPP55072 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VCPP55072 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.21■□□□□ 0.99
VCPP55072 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VCPP55072 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
VCPP55072 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
VCPP55072 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
VCPP55072 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VCPP55072 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VCPP55072 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
VCPP55072 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VCPP55072 KRT18P68-201ENST00000392293 1000 ntBASIC21.21■□□□□ 0.99
VCPP55072 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.21■□□□□ 0.99
VCPP55072 RNF146-204ENST00000476956 884 ntTSL 2 BASIC21.21■□□□□ 0.99
VCPP55072 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC21.21■□□□□ 0.99
VCPP55072 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VCPP55072 AL023875.1-201ENST00000640777 796 ntBASIC21.21■□□□□ 0.99
VCPP55072 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VCPP55072 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VCPP55072 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.21■□□□□ 0.99
VCPP55072 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VCPP55072 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21.21■□□□□ 0.99
VCPP55072 AL391422.3-201ENST00000603791 2761 ntBASIC21.2■□□□□ 0.98
VCPP55072 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.2■□□□□ 0.98
VCPP55072 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.2■□□□□ 0.98
VCPP55072 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VCPP55072 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21.2■□□□□ 0.98
VCPP55072 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.2■□□□□ 0.98
VCPP55072 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VCPP55072 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
VCPP55072 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
VCPP55072 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VCPP55072 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VCPP55072 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.2■□□□□ 0.98
VCPP55072 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VCPP55072 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC21.2■□□□□ 0.98
VCPP55072 RMI2-205ENST00000576027 818 ntTSL 2 BASIC21.2■□□□□ 0.98
VCPP55072 MTDHP1-201ENST00000605323 784 ntBASIC21.2■□□□□ 0.98
VCPP55072 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VCPP55072 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VCPP55072 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
VCPP55072 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VCPP55072 AL121603.2-201ENST00000557373 2117 ntBASIC21.2■□□□□ 0.98
VCPP55072 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VCPP55072 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC21.2■□□□□ 0.98
VCPP55072 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms