Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC17.38■□□□□ 0.37
COL8A1P27658 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
COL8A1P27658 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC17.38■□□□□ 0.37
COL8A1P27658 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.38■□□□□ 0.37
COL8A1P27658 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL8A1P27658 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL8A1P27658 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.37■□□□□ 0.37
COL8A1P27658 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
COL8A1P27658 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL8A1P27658 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.37■□□□□ 0.37
COL8A1P27658 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.37■□□□□ 0.37
COL8A1P27658 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.37■□□□□ 0.37
COL8A1P27658 AL138966.2-201ENST00000621997 464 ntBASIC17.37■□□□□ 0.37
COL8A1P27658 AL121956.5-201ENST00000625261 221 ntBASIC17.37■□□□□ 0.37
COL8A1P27658 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.37■□□□□ 0.37
COL8A1P27658 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL8A1P27658 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL8A1P27658 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC17.37■□□□□ 0.37
COL8A1P27658 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL8A1P27658 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL8A1P27658 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL8A1P27658 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL8A1P27658 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
COL8A1P27658 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
COL8A1P27658 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL8A1P27658 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.36■□□□□ 0.37
COL8A1P27658 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.36■□□□□ 0.37
COL8A1P27658 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL8A1P27658 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL8A1P27658 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.36■□□□□ 0.37
COL8A1P27658 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
COL8A1P27658 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL8A1P27658 AC011506.1-201ENST00000474329 610 ntBASIC17.36■□□□□ 0.37
COL8A1P27658 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.36■□□□□ 0.37
COL8A1P27658 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL8A1P27658 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.36■□□□□ 0.37
COL8A1P27658 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.36■□□□□ 0.37
COL8A1P27658 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL8A1P27658 GPALPP1-207ENST00000611650 899 ntBASIC17.36■□□□□ 0.37
COL8A1P27658 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL8A1P27658 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
COL8A1P27658 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL8A1P27658 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
COL8A1P27658 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL8A1P27658 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC17.36■□□□□ 0.37
COL8A1P27658 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
COL8A1P27658 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.35■□□□□ 0.37
COL8A1P27658 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
COL8A1P27658 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
COL8A1P27658 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL8A1P27658 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL8A1P27658 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL8A1P27658 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL8A1P27658 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.35■□□□□ 0.37
COL8A1P27658 HMGA1P5-201ENST00000412453 271 ntBASIC17.35■□□□□ 0.37
COL8A1P27658 PVRIG2P-201ENST00000435460 978 ntBASIC17.35■□□□□ 0.37
COL8A1P27658 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.35■□□□□ 0.37
COL8A1P27658 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.35■□□□□ 0.37
COL8A1P27658 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.35■□□□□ 0.37
COL8A1P27658 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.35■□□□□ 0.37
COL8A1P27658 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.35■□□□□ 0.37
COL8A1P27658 AC011558.1-201ENST00000623459 338 ntBASIC17.35■□□□□ 0.37
COL8A1P27658 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL8A1P27658 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL8A1P27658 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL8A1P27658 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL8A1P27658 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL8A1P27658 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
COL8A1P27658 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL8A1P27658 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL8A1P27658 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.34■□□□□ 0.37
COL8A1P27658 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL8A1P27658 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL8A1P27658 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL8A1P27658 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL8A1P27658 B3GAT3P1-201ENST00000471720 806 ntBASIC17.34■□□□□ 0.37
COL8A1P27658 COX11P1-201ENST00000489116 835 ntBASIC17.34■□□□□ 0.37
COL8A1P27658 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.34■□□□□ 0.37
COL8A1P27658 AC023632.3-201ENST00000521633 145 ntBASIC17.34■□□□□ 0.37
COL8A1P27658 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL8A1P27658 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL8A1P27658 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.34■□□□□ 0.37
COL8A1P27658 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
COL8A1P27658 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.34■□□□□ 0.37
COL8A1P27658 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.34■□□□□ 0.37
COL8A1P27658 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
COL8A1P27658 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL8A1P27658 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.34■□□□□ 0.37
COL8A1P27658 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL8A1P27658 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.34■□□□□ 0.37
COL8A1P27658 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL8A1P27658 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
COL8A1P27658 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.33■□□□□ 0.37
COL8A1P27658 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL8A1P27658 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL8A1P27658 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL8A1P27658 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL8A1P27658 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL8A1P27658 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL8A1P27658 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms