Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1BO60663 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
LMX1BO60663 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC17.43■□□□□ 0.38
LMX1BO60663 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1BO60663 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1BO60663 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.43■□□□□ 0.38
LMX1BO60663 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1BO60663 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1BO60663 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
LMX1BO60663 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.43■□□□□ 0.38
LMX1BO60663 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.43■□□□□ 0.38
LMX1BO60663 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.43■□□□□ 0.38
LMX1BO60663 AC093787.1-201ENST00000450396 207 ntBASIC17.43■□□□□ 0.38
LMX1BO60663 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.43■□□□□ 0.38
LMX1BO60663 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.43■□□□□ 0.38
LMX1BO60663 RARRES2P4-201ENST00000514074 484 ntBASIC17.43■□□□□ 0.38
LMX1BO60663 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.43■□□□□ 0.38
LMX1BO60663 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.43■□□□□ 0.38
LMX1BO60663 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.43■□□□□ 0.38
LMX1BO60663 AL356652.1-201ENST00000615962 565 ntBASIC17.43■□□□□ 0.38
LMX1BO60663 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1BO60663 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1BO60663 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1BO60663 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.43■□□□□ 0.38
LMX1BO60663 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.43■□□□□ 0.38
LMX1BO60663 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1BO60663 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.42■□□□□ 0.38
LMX1BO60663 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1BO60663 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1BO60663 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
LMX1BO60663 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1BO60663 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.42■□□□□ 0.38
LMX1BO60663 AC087633.2-202ENST00000565166 1439 ntBASIC17.42■□□□□ 0.38
LMX1BO60663 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1BO60663 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
LMX1BO60663 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
LMX1BO60663 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1BO60663 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1BO60663 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.42■□□□□ 0.38
LMX1BO60663 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC17.42■□□□□ 0.38
LMX1BO60663 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
LMX1BO60663 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1BO60663 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC17.42■□□□□ 0.38
LMX1BO60663 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
LMX1BO60663 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1BO60663 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC17.42■□□□□ 0.38
LMX1BO60663 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
LMX1BO60663 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC17.42■□□□□ 0.38
LMX1BO60663 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1BO60663 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
LMX1BO60663 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1BO60663 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1BO60663 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1BO60663 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1BO60663 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1BO60663 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1BO60663 ESRRAP1-201ENST00000400596 1257 ntBASIC17.41■□□□□ 0.38
LMX1BO60663 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
LMX1BO60663 DUSP5P2-201ENST00000426873 1033 ntBASIC17.41■□□□□ 0.38
LMX1BO60663 RPS2P52-201ENST00000469610 820 ntBASIC17.41■□□□□ 0.38
LMX1BO60663 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1BO60663 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.41■□□□□ 0.38
LMX1BO60663 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.41■□□□□ 0.38
LMX1BO60663 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1BO60663 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.41■□□□□ 0.38
LMX1BO60663 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.41■□□□□ 0.38
LMX1BO60663 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1BO60663 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1BO60663 CYP21A1P-202ENST00000354927 1481 ntBASIC17.41■□□□□ 0.38
LMX1BO60663 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1BO60663 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1BO60663 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1BO60663 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LMX1BO60663 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.4■□□□□ 0.38
LMX1BO60663 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
LMX1BO60663 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LMX1BO60663 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LMX1BO60663 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LMX1BO60663 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
LMX1BO60663 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
LMX1BO60663 CASP6-205ENST00000505486 538 ntTSL 4 BASIC17.4■□□□□ 0.38
LMX1BO60663 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.4■□□□□ 0.38
LMX1BO60663 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC17.4■□□□□ 0.38
LMX1BO60663 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.4■□□□□ 0.38
LMX1BO60663 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.4■□□□□ 0.38
LMX1BO60663 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.4■□□□□ 0.38
LMX1BO60663 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LMX1BO60663 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC17.4■□□□□ 0.38
LMX1BO60663 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LMX1BO60663 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LMX1BO60663 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.4■□□□□ 0.38
LMX1BO60663 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
LMX1BO60663 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
LMX1BO60663 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.39■□□□□ 0.38
LMX1BO60663 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1BO60663 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1BO60663 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1BO60663 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.39■□□□□ 0.37
LMX1BO60663 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1BO60663 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms