Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RIPK2O43353 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
RIPK2O43353 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
RIPK2O43353 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RIPK2O43353 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RIPK2O43353 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
RIPK2O43353 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RIPK2O43353 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RIPK2O43353 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RIPK2O43353 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RIPK2O43353 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK2O43353 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.15■□□□□ 0.82
RIPK2O43353 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK2O43353 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.15■□□□□ 0.82
RIPK2O43353 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK2O43353 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK2O43353 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.15■□□□□ 0.82
RIPK2O43353 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK2O43353 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.15■□□□□ 0.82
RIPK2O43353 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.15■□□□□ 0.82
RIPK2O43353 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.15■□□□□ 0.82
RIPK2O43353 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.15■□□□□ 0.82
RIPK2O43353 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.15■□□□□ 0.82
RIPK2O43353 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.15■□□□□ 0.82
RIPK2O43353 KRT8P17-201ENST00000453110 1448 ntBASIC20.15■□□□□ 0.82
RIPK2O43353 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.15■□□□□ 0.82
RIPK2O43353 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.15■□□□□ 0.82
RIPK2O43353 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK2O43353 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.15■□□□□ 0.82
RIPK2O43353 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK2O43353 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK2O43353 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK2O43353 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK2O43353 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK2O43353 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.15■□□□□ 0.82
RIPK2O43353 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK2O43353 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK2O43353 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK2O43353 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
RIPK2O43353 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
RIPK2O43353 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
RIPK2O43353 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.14■□□□□ 0.82
RIPK2O43353 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
RIPK2O43353 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK2O43353 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
RIPK2O43353 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK2O43353 AP001271.2-201ENST00000624018 1556 ntBASIC20.14■□□□□ 0.81
RIPK2O43353 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK2O43353 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK2O43353 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.14■□□□□ 0.81
RIPK2O43353 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.14■□□□□ 0.81
RIPK2O43353 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.14■□□□□ 0.81
RIPK2O43353 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK2O43353 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
RIPK2O43353 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.14■□□□□ 0.81
RIPK2O43353 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK2O43353 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK2O43353 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK2O43353 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.14■□□□□ 0.81
RIPK2O43353 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.13■□□□□ 0.81
RIPK2O43353 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.13■□□□□ 0.81
RIPK2O43353 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK2O43353 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
RIPK2O43353 CYP21A1P-202ENST00000354927 1481 ntBASIC20.13■□□□□ 0.81
RIPK2O43353 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
RIPK2O43353 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK2O43353 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
RIPK2O43353 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK2O43353 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
RIPK2O43353 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.13■□□□□ 0.81
RIPK2O43353 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK2O43353 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.13■□□□□ 0.81
RIPK2O43353 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.13■□□□□ 0.81
RIPK2O43353 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK2O43353 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
RIPK2O43353 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK2O43353 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.13■□□□□ 0.81
RIPK2O43353 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
RIPK2O43353 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.13■□□□□ 0.81
RIPK2O43353 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK2O43353 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.13■□□□□ 0.81
RIPK2O43353 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RIPK2O43353 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.13■□□□□ 0.81
RIPK2O43353 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.12■□□□□ 0.81
RIPK2O43353 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.12■□□□□ 0.81
RIPK2O43353 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK2O43353 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK2O43353 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK2O43353 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.12■□□□□ 0.81
RIPK2O43353 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK2O43353 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK2O43353 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK2O43353 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.12■□□□□ 0.81
RIPK2O43353 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK2O43353 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.12■□□□□ 0.81
RIPK2O43353 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.12■□□□□ 0.81
RIPK2O43353 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK2O43353 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.12■□□□□ 0.81
RIPK2O43353 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
RIPK2O43353 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms