Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
SDCBPO00560 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SDCBPO00560 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC16.85■□□□□ 0.29
SDCBPO00560 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
SDCBPO00560 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
SDCBPO00560 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC16.85■□□□□ 0.29
SDCBPO00560 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SDCBPO00560 KRT8P36-201ENST00000489121 1440 ntBASIC16.85■□□□□ 0.29
SDCBPO00560 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC16.85■□□□□ 0.29
SDCBPO00560 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC16.85■□□□□ 0.29
SDCBPO00560 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDCBPO00560 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
SDCBPO00560 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SDCBPO00560 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SDCBPO00560 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC16.84■□□□□ 0.29
SDCBPO00560 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SDCBPO00560 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SDCBPO00560 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC16.84■□□□□ 0.29
SDCBPO00560 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SDCBPO00560 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
SDCBPO00560 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDCBPO00560 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDCBPO00560 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SDCBPO00560 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDCBPO00560 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDCBPO00560 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDCBPO00560 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC16.84■□□□□ 0.29
SDCBPO00560 AC026271.2-201ENST00000428091 497 ntBASIC16.84■□□□□ 0.29
SDCBPO00560 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SDCBPO00560 TERF1P5-201ENST00000477545 1207 ntBASIC16.84■□□□□ 0.29
SDCBPO00560 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC16.84■□□□□ 0.29
SDCBPO00560 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC16.84■□□□□ 0.29
SDCBPO00560 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC16.84■□□□□ 0.29
SDCBPO00560 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
SDCBPO00560 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
SDCBPO00560 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SDCBPO00560 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDCBPO00560 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDCBPO00560 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC16.84■□□□□ 0.29
SDCBPO00560 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SDCBPO00560 PWWP2AP1-201ENST00000429776 2273 ntBASIC16.84■□□□□ 0.29
SDCBPO00560 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC16.84■□□□□ 0.29
SDCBPO00560 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SDCBPO00560 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.83■□□□□ 0.29
SDCBPO00560 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
SDCBPO00560 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
SDCBPO00560 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SDCBPO00560 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
SDCBPO00560 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.29
SDCBPO00560 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDCBPO00560 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDCBPO00560 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDCBPO00560 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.83■□□□□ 0.28
SDCBPO00560 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
SDCBPO00560 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDCBPO00560 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDCBPO00560 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
SDCBPO00560 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC16.83■□□□□ 0.28
SDCBPO00560 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
SDCBPO00560 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC16.83■□□□□ 0.28
SDCBPO00560 FAM21FP-204ENST00000608637 956 ntBASIC16.83■□□□□ 0.28
SDCBPO00560 MIR5787-201ENST00000611784 55 ntBASIC16.83■□□□□ 0.28
SDCBPO00560 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDCBPO00560 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SDCBPO00560 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC16.82■□□□□ 0.28
SDCBPO00560 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC16.82■□□□□ 0.28
SDCBPO00560 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SDCBPO00560 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC16.82■□□□□ 0.28
SDCBPO00560 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 TREX1-205ENST00000625293 1783 ntBASIC16.82■□□□□ 0.28
SDCBPO00560 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SDCBPO00560 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SDCBPO00560 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 SAPCD2P1-201ENST00000395413 1184 ntBASIC16.82■□□□□ 0.28
SDCBPO00560 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SDCBPO00560 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC16.82■□□□□ 0.28
SDCBPO00560 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC16.82■□□□□ 0.28
SDCBPO00560 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC16.82■□□□□ 0.28
SDCBPO00560 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
SDCBPO00560 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC16.82■□□□□ 0.28
SDCBPO00560 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SDCBPO00560 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SDCBPO00560 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms