Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 PNMA8C-201ENST00000617053 4255 ntAPPRIS P1 BASIC9.14□□□□□ -0.95
LRCH3Q96II8 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC9.13□□□□□ -0.95
LRCH3Q96II8 ZNF429-201ENST00000358491 2233 ntAPPRIS P1 TSL 3 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 BBS9-202ENST00000350941 3899 ntTSL 5 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 SNHG12-211ENST00000488745 1365 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
LRCH3Q96II8 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 ZNF252P-208ENST00000592792 2485 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 RHBDD1-202ENST00000392062 5151 ntAPPRIS P1 TSL 5 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 TRAF3IP2-AS1-209ENST00000532226 2191 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
LRCH3Q96II8 KIF9-AS1-201ENST00000429315 4898 ntTSL 2 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 CHODL-206ENST00000400135 2136 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
LRCH3Q96II8 MAK-201ENST00000313243 3984 ntAPPRIS P1 TSL 5 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 GRIA1-202ENST00000340592 3170 ntAPPRIS ALT1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LRCH3Q96II8 AC007823.1-201ENST00000569932 1566 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 AC007382.1-201ENST00000624376 2618 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 MAPK10-325ENST00000641537 2623 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 ZSCAN26-202ENST00000421553 2835 ntAPPRIS ALT1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LRCH3Q96II8 SMIM12-204ENST00000446026 2817 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LRCH3Q96II8 Y_RNA.142-201ENST00000363491 102 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 RNA5SP302-201ENST00000364896 100 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 MIR606-201ENST00000384851 96 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 IGLV11-55-201ENST00000390286 381 ntAPPRIS P1 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 RNA5SP35-201ENST00000391257 129 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LRCH3Q96II8 YWHAZ-202ENST00000395948 812 ntTSL 3 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 AL356776.1-201ENST00000406574 447 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 RN7SKP181-201ENST00000411188 316 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 AC009228.1-201ENST00000413254 240 ntTSL 2 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 AL161742.1-201ENST00000418154 584 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 RPL24P2-201ENST00000421023 475 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 AL353729.1-201ENST00000425044 720 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 LINC02020-204ENST00000435548 604 ntTSL 4 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 IPO7P1-201ENST00000442031 636 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
LRCH3Q96II8 TREML3P-201ENST00000457327 501 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 ARHGAP31-AS1-201ENST00000466292 624 ntTSL 4 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 AC073358.1-201ENST00000505671 684 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 AC098487.1-204ENST00000506972 610 ntTSL 3 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 AC017037.1-201ENST00000508460 471 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 AC010587.2-201ENST00000511727 448 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 RNU4ATAC12P-201ENST00000516460 113 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 RNA5SP101-201ENST00000517036 108 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 LINC01170-201ENST00000519703 406 ntTSL 5 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 AP002802.1-201ENST00000526154 342 ntTSL 3 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 AP000445.1-201ENST00000526692 741 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 AC084121.2-201ENST00000528788 264 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 AC005034.2-201ENST00000604464 414 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 AC098614.4-201ENST00000607601 462 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 AL031658.2-201ENST00000616850 651 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 SSBP2-212ENST00000509053 1534 ntTSL 2 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 BMS1P1-202ENST00000580094 4294 ntTSL 5 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 RSPH10B2-202ENST00000403107 3220 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LRCH3Q96II8 RSPH10B-203ENST00000405415 3222 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LRCH3Q96II8 CA5B-204ENST00000454127 2205 ntAPPRIS P1 TSL 5 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 AL139039.3-201ENST00000413129 1475 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
LRCH3Q96II8 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 LARP1B-202ENST00000394288 2151 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
LRCH3Q96II8 PCBP1-AS1-230ENST00000439670 2180 ntTSL 2 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 VSIG4-204ENST00000455586 2190 ntAPPRIS ALT2 TSL 1 (best) BASIC9.13□□□□□ -0.95
LRCH3Q96II8 PIWIL3-205ENST00000616349 3111 ntAPPRIS P2 TSL 1 (best) BASIC9.13□□□□□ -0.95
LRCH3Q96II8 PFKM-210ENST00000547587 2867 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
LRCH3Q96II8 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 EEF1A1P28-201ENST00000450915 1403 ntBASIC9.13□□□□□ -0.95
LRCH3Q96II8 HELQ-204ENST00000510985 3315 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
LRCH3Q96II8 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 ARID4A-201ENST00000348476 5562 ntTSL 5 BASIC9.13□□□□□ -0.95
LRCH3Q96II8 TCF4-205ENST00000537578 2767 ntTSL 2 BASIC9.12□□□□□ -0.95
LRCH3Q96II8 PAPD4-202ENST00000423041 3223 ntAPPRIS ALT1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LRCH3Q96II8 PLCH1-204ENST00000460012 6413 ntAPPRIS P3 TSL 5 BASIC9.12□□□□□ -0.95
LRCH3Q96II8 EEF1A1P10-201ENST00000475365 1390 ntBASIC9.12□□□□□ -0.95
LRCH3Q96II8 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
LRCH3Q96II8 DPF3-203ENST00000541685 4077 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LRCH3Q96II8 AC109347.1-201ENST00000562919 2036 ntBASIC9.12□□□□□ -0.95
LRCH3Q96II8 ZNF726-206ENST00000594466 2473 ntTSL 5 BASIC9.12□□□□□ -0.95
LRCH3Q96II8 ZNF583-202ENST00000333201 4916 ntAPPRIS P1 TSL 2 BASIC9.12□□□□□ -0.95
LRCH3Q96II8 PPP1R3B-201ENST00000310455 5548 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LRCH3Q96II8 DPYSL2-201ENST00000311151 4603 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LRCH3Q96II8 AC007638.2-201ENST00000574716 1740 ntTSL 2 BASIC9.12□□□□□ -0.95
LRCH3Q96II8 POU3F4-201ENST00000373200 3878 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
LRCH3Q96II8 GNE-206ENST00000543356 2576 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LRCH3Q96II8 SUPT6H-202ENST00000347486 5569 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LRCH3Q96II8 TTC39A-212ENST00000447632 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
LRCH3Q96II8 KCTD19-201ENST00000304372 2958 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
LRCH3Q96II8 SUGT1P3-201ENST00000304932 1051 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
LRCH3Q96II8 RPL24P4-201ENST00000326586 421 ntBASIC9.12□□□□□ -0.95
LRCH3Q96II8 SYF2-202ENST00000354361 926 ntTSL 2 BASIC9.12□□□□□ -0.95
LRCH3Q96II8 AL450313.1-201ENST00000366376 452 ntTSL 3 BASIC9.12□□□□□ -0.95
LRCH3Q96II8 Y_RNA.402-201ENST00000383972 102 ntBASIC9.12□□□□□ -0.95
LRCH3Q96II8 TTC23-203ENST00000394132 3849 ntAPPRIS P2 TSL 1 (best) BASIC9.12□□□□□ -0.95
LRCH3Q96II8 RN7SKP137-201ENST00000411074 307 ntBASIC9.12□□□□□ -0.95
LRCH3Q96II8 AC068533.2-201ENST00000411872 306 ntBASIC9.12□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms