RNA–Protein interactions for RNA: ENST00000390467.3

TRAV40-201, Transcript of T cell receptor alpha variable 40, humanhuman

APPRIS P1 BASIC

Gene TRAV40, Length 317 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40-201ENST00000390467 AEBP2Q6ZN18 517 aaPredicted RBP22.44■■□□□ 1.18
TRAV40-201ENST00000390467 CHIC1Q5VXU3 224 aa21.55■■□□□ 1.04
TRAV40-201ENST00000390467 SENP3Q9H4L4 574 aaPredicted RBP18.98■□□□□ 0.63
TRAV40-201ENST00000390467 PHF23Q9BUL5 403 aaPredicted RBP18.97■□□□□ 0.63
TRAV40-201ENST00000390467 FOXD1Q16676 465 aa17.71■□□□□ 0.43
TRAV40-201ENST00000390467 PLPPR3Q6T4P5 718 aa17.33■□□□□ 0.36
TRAV40-201ENST00000390467 PPP6R1Q9UPN7 881 aa16.84■□□□□ 0.29
TRAV40-201ENST00000390467 ADRA2BP18089 450 aa16.79■□□□□ 0.28
TRAV40-201ENST00000390467 PIAS4Q8N2W9 510 aaPredicted RBP16.6■□□□□ 0.25
TRAV40-201ENST00000390467 MSH5O43196 834 aa16.37■□□□□ 0.21
TRAV40-201ENST00000390467 POTEDQ86YR6 584 aa15.49■□□□□ 0.07
TRAV40-201ENST00000390467 MAPK8IP2Q13387 824 aaPredicted RBP15.34■□□□□ 0.05
TRAV40-201ENST00000390467 PPP4R3CPQ6ZMV5 832 aa15.26■□□□□ 0.03
TRAV40-201ENST00000390467 SCAF1Q9H7N4 1312 aaKnown RBP15.23■□□□□ 0.03
TRAV40-201ENST00000390467 DMRT2Q9Y5R5 561 aa15.13■□□□□ 0.01
TRAV40-201ENST00000390467 CNKSR2Q8WXI2 1034 aa14.87□□□□□ -0.03
TRAV40-201ENST00000390467 HOXD11P31277 338 aaPredicted RBP14.7□□□□□ -0.06
TRAV40-201ENST00000390467 NCBP3Q53F19 620 aaKnown RBP14.7□□□□□ -0.06
TRAV40-201ENST00000390467 RNF216Q9NWF9 866 aaPredicted RBP14.67□□□□□ -0.06
TRAV40-201ENST00000390467 KCNA4P22459 653 aa14.62□□□□□ -0.07
TRAV40-201ENST00000390467 NPM3O75607 178 aaKnown RBP14.59□□□□□ -0.07
TRAV40-201ENST00000390467 DCAF8L1A6NGE4 600 aa14.47□□□□□ -0.09
TRAV40-201ENST00000390467 DNAJC5BQ9UF47 199 aa14.16□□□□□ -0.14
TRAV40-201ENST00000390467 RNF39Q9H2S5 420 aa14.05□□□□□ -0.16
TRAV40-201ENST00000390467 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.98□□□□□ -0.17
TRAV40-201ENST00000390467 SLC4A2P04920 1241 aa13.87□□□□□ -0.19
TRAV40-201ENST00000390467 CACNB1Q02641 598 aaPredicted RBP13.86□□□□□ -0.19
TRAV40-201ENST00000390467 SLC4A1APQ9BWU0 796 aaKnown RBP13.82□□□□□ -0.2
TRAV40-201ENST00000390467 C1QBPQ07021 282 aaKnown RBP13.81□□□□□ -0.2
TRAV40-201ENST00000390467 U3KPZ7 1027 aaPredicted RBP13.8□□□□□ -0.2
TRAV40-201ENST00000390467 SPINK5Q9NQ38 1064 aaPredicted RBP13.5□□□□□ -0.25
TRAV40-201ENST00000390467 FOXD4L1Q9NU39 408 aa13.5□□□□□ -0.25
TRAV40-201ENST00000390467 ZBTB22O15209 634 aa13.49□□□□□ -0.25
TRAV40-201ENST00000390467 MYCNP04198 464 aaPredicted RBP13.44□□□□□ -0.26
TRAV40-201ENST00000390467 CAPN15O75808 1086 aa13.4□□□□□ -0.26
TRAV40-201ENST00000390467 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.39□□□□□ -0.27
TRAV40-201ENST00000390467 HNRNPUL2Q1KMD3 747 aaKnown RBP13.39□□□□□ -0.27
TRAV40-201ENST00000390467 SAMD1Q6SPF0 538 aaPredicted RBP13.36□□□□□ -0.27
TRAV40-201ENST00000390467 APLP2Q06481 763 aa13.3□□□□□ -0.28
TRAV40-201ENST00000390467 TRHP20396 242 aaPredicted RBP13.28□□□□□ -0.28
TRAV40-201ENST00000390467 DSG3P32926 999 aa13.28□□□□□ -0.28
TRAV40-201ENST00000390467 ZNF219Q9P2Y4 722 aaPredicted RBP13.23□□□□□ -0.29
TRAV40-201ENST00000390467 ATF5Q9Y2D1 282 aaPredicted RBP13.19□□□□□ -0.3
TRAV40-201ENST00000390467 ABCB7O75027 752 aa13.16□□□□□ -0.3
TRAV40-201ENST00000390467 EHMT2Q96KQ7 1210 aa13.14□□□□□ -0.31
TRAV40-201ENST00000390467 CSRNP3Q8WYN3 585 aa13.13□□□□□ -0.31
TRAV40-201ENST00000390467 ATXN8OSP0DMR3 200 aa13□□□□□ -0.33
TRAV40-201ENST00000390467 POLA2Q14181 598 aa12.99□□□□□ -0.33
TRAV40-201ENST00000390467 ZBTB12Q9Y330 459 aaPredicted RBP12.69□□□□□ -0.38
TRAV40-201ENST00000390467 OSCARQ8IYS5 282 aa12.61□□□□□ -0.39
TRAV40-201ENST00000390467 MKRN4PQ13434 485 aaPredicted RBP12.59□□□□□ -0.39
TRAV40-201ENST00000390467 RBM42Q9BTD8 480 aaKnown RBP12.59□□□□□ -0.39
TRAV40-201ENST00000390467 FBLN2P98095 1184 aa12.53□□□□□ -0.4
TRAV40-201ENST00000390467 AKT1S1Q96B36 256 aa12.39□□□□□ -0.43
TRAV40-201ENST00000390467 SPDYE2BA6NHP3 402 aa12.36□□□□□ -0.43
TRAV40-201ENST00000390467 SPDYE6P0CI01 402 aa12.36□□□□□ -0.43
TRAV40-201ENST00000390467 SPDYE2Q495Y8 402 aa12.36□□□□□ -0.43
TRAV40-201ENST00000390467 REM2Q8IYK8 340 aaPredicted RBP12.31□□□□□ -0.44
TRAV40-201ENST00000390467 SSUH2Q9Y2M2 353 aa12.28□□□□□ -0.44
TRAV40-201ENST00000390467 ZNF692Q9BU19 519 aaPredicted RBP12.27□□□□□ -0.45
TRAV40-201ENST00000390467 CHRDL2Q6WN34 429 aa12.23□□□□□ -0.45
TRAV40-201ENST00000390467 PITPNM1O00562 1244 aa12.2□□□□□ -0.46
TRAV40-201ENST00000390467 POTEHQ6S545 545 aa12.19□□□□□ -0.46
TRAV40-201ENST00000390467 PABPN1Q86U42 306 aaKnown RBP eCLIP12.13□□□□□ -0.47
TRAV40-201ENST00000390467 SPDYE4A6NLX3 237 aa12.11□□□□□ -0.47
TRAV40-201ENST00000390467 SPDYE1Q8NFV5 336 aaPredicted RBP12.06□□□□□ -0.48
TRAV40-201ENST00000390467 CLEC11AQ9Y240 323 aa12.04□□□□□ -0.48
TRAV40-201ENST00000390467 PIP4P2Q8N4L2 257 aa12.03□□□□□ -0.48
TRAV40-201ENST00000390467 FXR2P51116 673 aaKnown RBP eCLIP12□□□□□ -0.49
TRAV40-201ENST00000390467 PROM2Q8N271 834 aa11.9□□□□□ -0.5
TRAV40-201ENST00000390467 PRR29P0C7W0 189 aa11.87□□□□□ -0.51
TRAV40-201ENST00000390467 PRKAR2AP13861 404 aaKnown RBP11.86□□□□□ -0.51
TRAV40-201ENST00000390467 FKBP8Q14318 412 aa11.86□□□□□ -0.51
TRAV40-201ENST00000390467 CHADLQ6NUI6 762 aa11.83□□□□□ -0.52
TRAV40-201ENST00000390467 STAG3Q9UJ98 1225 aa11.78□□□□□ -0.52
TRAV40-201ENST00000390467 CREBZFQ9NS37 354 aa11.71□□□□□ -0.53
TRAV40-201ENST00000390467 HAX1O00165 279 aa11.68□□□□□ -0.54
TRAV40-201ENST00000390467 EVX2Q03828 476 aa11.65□□□□□ -0.54
TRAV40-201ENST00000390467 FARP1Q9Y4F1 1045 aaPredicted RBP11.65□□□□□ -0.54
TRAV40-201ENST00000390467 C19orf67A6NJJ6 358 aa11.61□□□□□ -0.55
TRAV40-201ENST00000390467 MNX1P50219 401 aaPredicted RBP11.57□□□□□ -0.56
TRAV40-201ENST00000390467 SP7Q8TDD2 431 aaPredicted RBP11.57□□□□□ -0.56
TRAV40-201ENST00000390467 CD44P16070 742 aaKnown RBP11.5□□□□□ -0.57
TRAV40-201ENST00000390467 MIER1Q8N108 512 aa11.47□□□□□ -0.57
TRAV40-201ENST00000390467 FBXO3Q9UK99 471 aa11.43□□□□□ -0.58
TRAV40-201ENST00000390467 PLCD3Q8N3E9 789 aa11.42□□□□□ -0.58
TRAV40-201ENST00000390467 NPM1P06748 294 aaKnown RBP eCLIP11.41□□□□□ -0.58
TRAV40-201ENST00000390467 ZRANB1Q9UGI0 708 aa11.38□□□□□ -0.59
TRAV40-201ENST00000390467 PLEKHG5O94827 1062 aa11.37□□□□□ -0.59
TRAV40-201ENST00000390467 GABBR2O75899 941 aa11.36□□□□□ -0.59
TRAV40-201ENST00000390467 VASPP50552 380 aaPredicted RBP11.36□□□□□ -0.59
TRAV40-201ENST00000390467 ZNF579Q8NAF0 562 aaKnown RBP11.34□□□□□ -0.59
TRAV40-201ENST00000390467 RASEFQ8IZ41 740 aa11.32□□□□□ -0.6
TRAV40-201ENST00000390467 PHF12Q96QT6 1004 aa11.31□□□□□ -0.6
TRAV40-201ENST00000390467 PAK3O75914 559 aaPredicted RBP11.29□□□□□ -0.6
TRAV40-201ENST00000390467 TSPYL2Q9H2G4 693 aaPredicted RBP11.28□□□□□ -0.6
TRAV40-201ENST00000390467 NUBP1P53384 320 aa11.27□□□□□ -0.61
TRAV40-201ENST00000390467 ZBTB47Q9UFB7 747 aaPredicted RBP11.27□□□□□ -0.61
TRAV40-201ENST00000390467 CCDC61Q9Y6R9 512 aa11.24□□□□□ -0.61
TRAV40-201ENST00000390467 GALR2O43603 387 aaPredicted RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms