Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 AC231657.2-201ENST00000624556 255 ntBASIC20.77■□□□□ 0.92
PCDHA3Q9Y5H8 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHA3Q9Y5H8 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHA3Q9Y5H8 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHA3Q9Y5H8 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.77■□□□□ 0.91
PCDHA3Q9Y5H8 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
PCDHA3Q9Y5H8 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
PCDHA3Q9Y5H8 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PCDHA3Q9Y5H8 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PCDHA3Q9Y5H8 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.77■□□□□ 0.91
PCDHA3Q9Y5H8 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
PCDHA3Q9Y5H8 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 HLA-G-202ENST00000376815 851 ntBASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 HLA-G-203ENST00000376818 1127 ntBASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 AC008694.1-202ENST00000636953 945 ntBASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
PCDHA3Q9Y5H8 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 BID-214ENST00000617586 542 ntTSL 5 BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 OR10C1-204ENST00000622521 1039 ntBASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 AC010980.2-201ENST00000587099 1412 ntBASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDHA3Q9Y5H8 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 AC007322.1-201ENST00000426983 750 ntBASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 AC023632.3-201ENST00000521633 145 ntBASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 C2orf69P4-201ENST00000565394 541 ntBASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 Z82202.1-201ENST00000623446 1880 ntBASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PCDHA3Q9Y5H8 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 AP000974.1-201ENST00000623909 2387 ntBASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHA3Q9Y5H8 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms