Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CTDP1Q9Y5B0 H19-201ENST00000411754 1788 ntTSL 5 BASIC23.02■■□□□ 1.28
CTDP1Q9Y5B0 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CTDP1Q9Y5B0 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CTDP1Q9Y5B0 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CTDP1Q9Y5B0 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CTDP1Q9Y5B0 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
CTDP1Q9Y5B0 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CTDP1Q9Y5B0 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC23.02■■□□□ 1.28
CTDP1Q9Y5B0 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC23.02■■□□□ 1.28
CTDP1Q9Y5B0 BX088651.1-201ENST00000540551 451 ntBASIC23.02■■□□□ 1.28
CTDP1Q9Y5B0 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CTDP1Q9Y5B0 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CTDP1Q9Y5B0 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC23.02■■□□□ 1.28
CTDP1Q9Y5B0 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CTDP1Q9Y5B0 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
CTDP1Q9Y5B0 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.27
CTDP1Q9Y5B0 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.27
CTDP1Q9Y5B0 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 ECEL1P3-201ENST00000427961 737 ntBASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 AL355355.2-201ENST00000442321 338 ntBASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 AF186192.3-201ENST00000583427 947 ntBASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CTDP1Q9Y5B0 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC23■■□□□ 1.27
CTDP1Q9Y5B0 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CTDP1Q9Y5B0 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
CTDP1Q9Y5B0 SAPCD2P4-201ENST00000424595 1171 ntBASIC23■■□□□ 1.27
CTDP1Q9Y5B0 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC23■■□□□ 1.27
CTDP1Q9Y5B0 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC23■■□□□ 1.27
CTDP1Q9Y5B0 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC23■■□□□ 1.27
CTDP1Q9Y5B0 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
CTDP1Q9Y5B0 AC007225.1-201ENST00000566331 1836 ntBASIC23■■□□□ 1.27
CTDP1Q9Y5B0 AC026310.3-201ENST00000625186 2373 ntBASIC23■■□□□ 1.27
CTDP1Q9Y5B0 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CTDP1Q9Y5B0 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CTDP1Q9Y5B0 AC005229.4-201ENST00000610085 2198 ntBASIC23■■□□□ 1.27
CTDP1Q9Y5B0 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
CTDP1Q9Y5B0 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC23■■□□□ 1.27
CTDP1Q9Y5B0 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC23■■□□□ 1.27
CTDP1Q9Y5B0 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC23■■□□□ 1.27
CTDP1Q9Y5B0 AC092720.2-201ENST00000602388 1665 ntBASIC23■■□□□ 1.27
CTDP1Q9Y5B0 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 AC211429.1-201ENST00000415277 523 ntBASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 AP002982.1-201ENST00000492365 877 ntBASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 AC026471.5-201ENST00000615068 467 ntBASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 KRT16P6-202ENST00000425692 1426 ntBASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
CTDP1Q9Y5B0 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC22.98■■□□□ 1.27
CTDP1Q9Y5B0 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
CTDP1Q9Y5B0 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CTDP1Q9Y5B0 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
CTDP1Q9Y5B0 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
CTDP1Q9Y5B0 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CTDP1Q9Y5B0 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC22.98■■□□□ 1.27
CTDP1Q9Y5B0 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC22.98■■□□□ 1.27
CTDP1Q9Y5B0 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CTDP1Q9Y5B0 CD177P1-201ENST00000606252 935 ntBASIC22.98■■□□□ 1.27
CTDP1Q9Y5B0 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC22.98■■□□□ 1.27
CTDP1Q9Y5B0 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC22.98■■□□□ 1.27
CTDP1Q9Y5B0 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CTDP1Q9Y5B0 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
CTDP1Q9Y5B0 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms