Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA2Q9Y261 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA2Q9Y261 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA2Q9Y261 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC16.08■□□□□ 0.16
FOXA2Q9Y261 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA2Q9Y261 AL512625.2-201ENST00000417533 625 ntBASIC16.08■□□□□ 0.16
FOXA2Q9Y261 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC16.08■□□□□ 0.16
FOXA2Q9Y261 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC16.08■□□□□ 0.16
FOXA2Q9Y261 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA2Q9Y261 CYP21A1P-202ENST00000354927 1481 ntBASIC16.08■□□□□ 0.16
FOXA2Q9Y261 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA2Q9Y261 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA2Q9Y261 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
FOXA2Q9Y261 STX6-204ENST00000542060 4809 ntTSL 2 BASIC16.08■□□□□ 0.16
FOXA2Q9Y261 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC16.08■□□□□ 0.16
FOXA2Q9Y261 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA2Q9Y261 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC16.08■□□□□ 0.16
FOXA2Q9Y261 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA2Q9Y261 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC16.07■□□□□ 0.16
FOXA2Q9Y261 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC16.07■□□□□ 0.16
FOXA2Q9Y261 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA2Q9Y261 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA2Q9Y261 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA2Q9Y261 MCRIP2P1-201ENST00000394346 511 ntBASIC16.07■□□□□ 0.16
FOXA2Q9Y261 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC16.07■□□□□ 0.16
FOXA2Q9Y261 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC16.07■□□□□ 0.16
FOXA2Q9Y261 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC16.07■□□□□ 0.16
FOXA2Q9Y261 OAS3-207ENST00000551007 998 ntTSL 2 BASIC16.07■□□□□ 0.16
FOXA2Q9Y261 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC16.07■□□□□ 0.16
FOXA2Q9Y261 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA2Q9Y261 GOLGA2P11-201ENST00000562660 1621 ntBASIC16.07■□□□□ 0.16
FOXA2Q9Y261 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC16.07■□□□□ 0.16
FOXA2Q9Y261 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
FOXA2Q9Y261 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA2Q9Y261 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC16.07■□□□□ 0.16
FOXA2Q9Y261 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC16.07■□□□□ 0.16
FOXA2Q9Y261 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 GPX1P1-201ENST00000388829 606 ntBASIC16.06■□□□□ 0.16
FOXA2Q9Y261 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 NCF1B-203ENST00000435988 1254 ntBASIC16.06■□□□□ 0.16
FOXA2Q9Y261 AC083906.2-201ENST00000511578 360 ntBASIC16.06■□□□□ 0.16
FOXA2Q9Y261 ISCU-212ENST00000547005 795 ntTSL 3 BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 GXYLT1P5-201ENST00000614548 1189 ntBASIC16.06■□□□□ 0.16
FOXA2Q9Y261 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA2Q9Y261 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA2Q9Y261 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
FOXA2Q9Y261 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA2Q9Y261 MKRN4P-201ENST00000444706 1521 ntBASIC16.05■□□□□ 0.16
FOXA2Q9Y261 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
FOXA2Q9Y261 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA2Q9Y261 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA2Q9Y261 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.05■□□□□ 0.16
FOXA2Q9Y261 SLC29A4P1-201ENST00000398760 971 ntBASIC16.05■□□□□ 0.16
FOXA2Q9Y261 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC16.05■□□□□ 0.16
FOXA2Q9Y261 AC093787.1-201ENST00000450396 207 ntBASIC16.05■□□□□ 0.16
FOXA2Q9Y261 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC16.05■□□□□ 0.16
FOXA2Q9Y261 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA2Q9Y261 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC16.05■□□□□ 0.16
FOXA2Q9Y261 WT1-AS_3.1-201ENST00000613262 234 ntBASIC16.05■□□□□ 0.16
FOXA2Q9Y261 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
FOXA2Q9Y261 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC16.05■□□□□ 0.16
FOXA2Q9Y261 MOK-225ENST00000522867 1883 ntTSL 5 BASIC16.05■□□□□ 0.16
FOXA2Q9Y261 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC16.05■□□□□ 0.16
FOXA2Q9Y261 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC16.05■□□□□ 0.16
FOXA2Q9Y261 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 AC010980.2-201ENST00000587099 1412 ntBASIC16.04■□□□□ 0.16
FOXA2Q9Y261 STK25-205ENST00000405883 1904 ntTSL 2 BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 METTL15-202ENST00000403099 795 ntTSL 5 BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 BX323043.1-201ENST00000641006 1765 ntBASIC16.04■□□□□ 0.16
FOXA2Q9Y261 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC16.04■□□□□ 0.16
FOXA2Q9Y261 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms