Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.77■□□□□ 0.92
LIMD1Q9UGP4 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
LIMD1Q9UGP4 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
LIMD1Q9UGP4 AL024507.2-201ENST00000606070 2574 ntBASIC20.76■□□□□ 0.91
LIMD1Q9UGP4 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIMD1Q9UGP4 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
LIMD1Q9UGP4 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.76■□□□□ 0.91
LIMD1Q9UGP4 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.76■□□□□ 0.91
LIMD1Q9UGP4 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.76■□□□□ 0.91
LIMD1Q9UGP4 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.76■□□□□ 0.91
LIMD1Q9UGP4 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
LIMD1Q9UGP4 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIMD1Q9UGP4 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIMD1Q9UGP4 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
LIMD1Q9UGP4 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMD1Q9UGP4 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMD1Q9UGP4 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIMD1Q9UGP4 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMD1Q9UGP4 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIMD1Q9UGP4 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.75■□□□□ 0.91
LIMD1Q9UGP4 AC010203.1-204ENST00000548782 407 ntBASIC20.75■□□□□ 0.91
LIMD1Q9UGP4 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.75■□□□□ 0.91
LIMD1Q9UGP4 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
LIMD1Q9UGP4 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.75■□□□□ 0.91
LIMD1Q9UGP4 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMD1Q9UGP4 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIMD1Q9UGP4 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
LIMD1Q9UGP4 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMD1Q9UGP4 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.75■□□□□ 0.91
LIMD1Q9UGP4 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.75■□□□□ 0.91
LIMD1Q9UGP4 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMD1Q9UGP4 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 KRT16P1-201ENST00000399124 1418 ntBASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 LIN28AP1-201ENST00000429574 405 ntBASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
LIMD1Q9UGP4 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 NIFKP9-201ENST00000419265 221 ntBASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 WDR88-203ENST00000592765 651 ntTSL 5 BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMD1Q9UGP4 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.72■□□□□ 0.91
LIMD1Q9UGP4 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms