Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SSU72Q9NP77 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SSU72Q9NP77 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SSU72Q9NP77 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
SSU72Q9NP77 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SSU72Q9NP77 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SSU72Q9NP77 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
SSU72Q9NP77 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.75■□□□□ 0.75
SSU72Q9NP77 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SSU72Q9NP77 CROCCP3-202ENST00000420820 1947 ntBASIC19.74■□□□□ 0.75
SSU72Q9NP77 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.74■□□□□ 0.75
SSU72Q9NP77 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.74■□□□□ 0.75
SSU72Q9NP77 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SSU72Q9NP77 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
SSU72Q9NP77 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SSU72Q9NP77 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SSU72Q9NP77 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
SSU72Q9NP77 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
SSU72Q9NP77 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.74■□□□□ 0.75
SSU72Q9NP77 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SSU72Q9NP77 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SSU72Q9NP77 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.74■□□□□ 0.75
SSU72Q9NP77 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.74■□□□□ 0.75
SSU72Q9NP77 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.74■□□□□ 0.75
SSU72Q9NP77 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SSU72Q9NP77 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
SSU72Q9NP77 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.74■□□□□ 0.75
SSU72Q9NP77 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SSU72Q9NP77 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SSU72Q9NP77 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SSU72Q9NP77 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
SSU72Q9NP77 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.73■□□□□ 0.75
SSU72Q9NP77 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.73■□□□□ 0.75
SSU72Q9NP77 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.73■□□□□ 0.75
SSU72Q9NP77 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SSU72Q9NP77 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SSU72Q9NP77 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SSU72Q9NP77 LINC02228-203ENST00000641970 1355 ntBASIC19.73■□□□□ 0.75
SSU72Q9NP77 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SSU72Q9NP77 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.73■□□□□ 0.75
SSU72Q9NP77 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SSU72Q9NP77 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SSU72Q9NP77 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SSU72Q9NP77 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.73■□□□□ 0.75
SSU72Q9NP77 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.73■□□□□ 0.75
SSU72Q9NP77 SUDS3P1-201ENST00000505831 966 ntBASIC19.73■□□□□ 0.75
SSU72Q9NP77 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.73■□□□□ 0.75
SSU72Q9NP77 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.73■□□□□ 0.75
SSU72Q9NP77 AL031963.3-201ENST00000606441 850 ntBASIC19.73■□□□□ 0.75
SSU72Q9NP77 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
SSU72Q9NP77 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SSU72Q9NP77 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SSU72Q9NP77 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SSU72Q9NP77 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SSU72Q9NP77 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SSU72Q9NP77 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
SSU72Q9NP77 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SSU72Q9NP77 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SSU72Q9NP77 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SSU72Q9NP77 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.72■□□□□ 0.75
SSU72Q9NP77 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.72■□□□□ 0.75
SSU72Q9NP77 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SSU72Q9NP77 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SSU72Q9NP77 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SSU72Q9NP77 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.72■□□□□ 0.75
SSU72Q9NP77 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SSU72Q9NP77 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SSU72Q9NP77 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.72■□□□□ 0.75
SSU72Q9NP77 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.72■□□□□ 0.75
SSU72Q9NP77 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.72■□□□□ 0.75
SSU72Q9NP77 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SSU72Q9NP77 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SSU72Q9NP77 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SSU72Q9NP77 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SSU72Q9NP77 CYP21A1P-202ENST00000354927 1481 ntBASIC19.72■□□□□ 0.75
SSU72Q9NP77 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.72■□□□□ 0.75
SSU72Q9NP77 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SSU72Q9NP77 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.71■□□□□ 0.75
SSU72Q9NP77 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SSU72Q9NP77 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SSU72Q9NP77 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSU72Q9NP77 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSU72Q9NP77 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.71■□□□□ 0.75
SSU72Q9NP77 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSU72Q9NP77 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SSU72Q9NP77 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSU72Q9NP77 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSU72Q9NP77 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSU72Q9NP77 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.71■□□□□ 0.75
SSU72Q9NP77 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.71■□□□□ 0.75
SSU72Q9NP77 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSU72Q9NP77 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSU72Q9NP77 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSU72Q9NP77 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSU72Q9NP77 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
SSU72Q9NP77 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SSU72Q9NP77 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SSU72Q9NP77 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SSU72Q9NP77 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SSU72Q9NP77 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms