Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC25.37■■□□□ 1.65
USP42Q9H9J4 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
USP42Q9H9J4 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
USP42Q9H9J4 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
USP42Q9H9J4 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
USP42Q9H9J4 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC25.37■■□□□ 1.65
USP42Q9H9J4 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC25.37■■□□□ 1.65
USP42Q9H9J4 PTBP1P-201ENST00000554374 1601 ntBASIC25.37■■□□□ 1.65
USP42Q9H9J4 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
USP42Q9H9J4 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC25.37■■□□□ 1.65
USP42Q9H9J4 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
USP42Q9H9J4 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
USP42Q9H9J4 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
USP42Q9H9J4 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
USP42Q9H9J4 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
USP42Q9H9J4 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
USP42Q9H9J4 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC25.37■■□□□ 1.65
USP42Q9H9J4 EFS-203ENST00000429593 2610 ntTSL 2 BASIC25.37■■□□□ 1.65
USP42Q9H9J4 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
USP42Q9H9J4 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
USP42Q9H9J4 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC25.36■■□□□ 1.65
USP42Q9H9J4 PLK5-205ENST00000642079 1969 ntBASIC25.36■■□□□ 1.65
USP42Q9H9J4 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
USP42Q9H9J4 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC25.36■■□□□ 1.65
USP42Q9H9J4 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC25.36■■□□□ 1.65
USP42Q9H9J4 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
USP42Q9H9J4 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
USP42Q9H9J4 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC25.36■■□□□ 1.65
USP42Q9H9J4 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC25.36■■□□□ 1.65
USP42Q9H9J4 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC25.36■■□□□ 1.65
USP42Q9H9J4 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
USP42Q9H9J4 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC25.36■■□□□ 1.65
USP42Q9H9J4 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC25.36■■□□□ 1.65
USP42Q9H9J4 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC25.36■■□□□ 1.65
USP42Q9H9J4 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC25.35■■□□□ 1.65
USP42Q9H9J4 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC25.35■■□□□ 1.65
USP42Q9H9J4 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
USP42Q9H9J4 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
USP42Q9H9J4 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
USP42Q9H9J4 AC104076.2-201ENST00000448912 469 ntBASIC25.35■■□□□ 1.65
USP42Q9H9J4 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC25.35■■□□□ 1.65
USP42Q9H9J4 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
USP42Q9H9J4 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC25.35■■□□□ 1.65
USP42Q9H9J4 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
USP42Q9H9J4 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
USP42Q9H9J4 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC25.34■■□□□ 1.65
USP42Q9H9J4 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
USP42Q9H9J4 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
USP42Q9H9J4 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC25.34■■□□□ 1.65
USP42Q9H9J4 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
USP42Q9H9J4 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
USP42Q9H9J4 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
USP42Q9H9J4 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
USP42Q9H9J4 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
USP42Q9H9J4 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
USP42Q9H9J4 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
USP42Q9H9J4 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC25.34■■□□□ 1.65
USP42Q9H9J4 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC25.34■■□□□ 1.65
USP42Q9H9J4 NTF6B-201ENST00000591913 560 ntBASIC25.34■■□□□ 1.65
USP42Q9H9J4 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
USP42Q9H9J4 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
USP42Q9H9J4 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
USP42Q9H9J4 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
USP42Q9H9J4 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
USP42Q9H9J4 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC25.33■■□□□ 1.65
USP42Q9H9J4 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC25.33■■□□□ 1.65
USP42Q9H9J4 ERF-202ENST00000440177 2032 ntTSL 2 BASIC25.33■■□□□ 1.65
USP42Q9H9J4 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC25.33■■□□□ 1.65
USP42Q9H9J4 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
USP42Q9H9J4 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
USP42Q9H9J4 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
USP42Q9H9J4 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.64
USP42Q9H9J4 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
USP42Q9H9J4 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.64
USP42Q9H9J4 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC25.33■■□□□ 1.64
USP42Q9H9J4 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
USP42Q9H9J4 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC25.33■■□□□ 1.64
USP42Q9H9J4 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP42Q9H9J4 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP42Q9H9J4 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
USP42Q9H9J4 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC25.32■■□□□ 1.64
USP42Q9H9J4 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC25.32■■□□□ 1.64
USP42Q9H9J4 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC25.32■■□□□ 1.64
USP42Q9H9J4 AC010203.1-204ENST00000548782 407 ntBASIC25.32■■□□□ 1.64
USP42Q9H9J4 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC25.32■■□□□ 1.64
USP42Q9H9J4 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC25.32■■□□□ 1.64
USP42Q9H9J4 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
USP42Q9H9J4 AC121338.2-201ENST00000622535 1744 ntBASIC25.31■■□□□ 1.64
USP42Q9H9J4 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
USP42Q9H9J4 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
USP42Q9H9J4 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
USP42Q9H9J4 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC25.31■■□□□ 1.64
USP42Q9H9J4 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
USP42Q9H9J4 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC25.31■■□□□ 1.64
USP42Q9H9J4 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC25.31■■□□□ 1.64
USP42Q9H9J4 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC25.31■■□□□ 1.64
USP42Q9H9J4 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC25.31■■□□□ 1.64
USP42Q9H9J4 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
USP42Q9H9J4 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC25.31■■□□□ 1.64
USP42Q9H9J4 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC25.31■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms