Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC28BQ9BUN5 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC28BQ9BUN5 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC28BQ9BUN5 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC28BQ9BUN5 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.33■□□□□ 0.68
CCDC28BQ9BUN5 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC28BQ9BUN5 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 AC008406.3-201ENST00000620001 1374 ntBASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 SUDS3P1-201ENST00000505831 966 ntBASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 AL356652.1-201ENST00000615962 565 ntBASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28BQ9BUN5 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC28BQ9BUN5 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
CCDC28BQ9BUN5 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC28BQ9BUN5 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
CCDC28BQ9BUN5 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC28BQ9BUN5 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC28BQ9BUN5 AC027612.3-201ENST00000413684 1047 ntBASIC19.31■□□□□ 0.68
CCDC28BQ9BUN5 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC28BQ9BUN5 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC28BQ9BUN5 AC131212.1-201ENST00000613771 668 ntBASIC19.31■□□□□ 0.68
CCDC28BQ9BUN5 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CCDC28BQ9BUN5 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC28BQ9BUN5 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC28BQ9BUN5 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC28BQ9BUN5 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC28BQ9BUN5 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC28BQ9BUN5 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC28BQ9BUN5 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC28BQ9BUN5 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 AC087633.2-202ENST00000565166 1439 ntBASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC28BQ9BUN5 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 AC093503.3-201ENST00000624917 2352 ntBASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 LINC02228-203ENST00000641970 1355 ntBASIC19.29■□□□□ 0.68
CCDC28BQ9BUN5 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 AC019069.1-201ENST00000610008 1333 ntBASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms