Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC17.31■□□□□ 0.36
NKX3-1Q99801 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NKX3-1Q99801 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC17.31■□□□□ 0.36
NKX3-1Q99801 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.31■□□□□ 0.36
NKX3-1Q99801 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC17.31■□□□□ 0.36
NKX3-1Q99801 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NKX3-1Q99801 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC17.31■□□□□ 0.36
NKX3-1Q99801 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.31■□□□□ 0.36
NKX3-1Q99801 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.31■□□□□ 0.36
NKX3-1Q99801 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NKX3-1Q99801 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.31■□□□□ 0.36
NKX3-1Q99801 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NKX3-1Q99801 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.31■□□□□ 0.36
NKX3-1Q99801 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
NKX3-1Q99801 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NKX3-1Q99801 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.3■□□□□ 0.36
NKX3-1Q99801 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
NKX3-1Q99801 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
NKX3-1Q99801 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
NKX3-1Q99801 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
NKX3-1Q99801 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC17.3■□□□□ 0.36
NKX3-1Q99801 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
NKX3-1Q99801 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NKX3-1Q99801 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC17.3■□□□□ 0.36
NKX3-1Q99801 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC17.3■□□□□ 0.36
NKX3-1Q99801 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.3■□□□□ 0.36
NKX3-1Q99801 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC17.3■□□□□ 0.36
NKX3-1Q99801 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC17.3■□□□□ 0.36
NKX3-1Q99801 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC17.3■□□□□ 0.36
NKX3-1Q99801 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.3■□□□□ 0.36
NKX3-1Q99801 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC17.3■□□□□ 0.36
NKX3-1Q99801 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
NKX3-1Q99801 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NKX3-1Q99801 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.3■□□□□ 0.36
NKX3-1Q99801 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NKX3-1Q99801 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NKX3-1Q99801 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
NKX3-1Q99801 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX3-1Q99801 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX3-1Q99801 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
NKX3-1Q99801 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC17.29■□□□□ 0.36
NKX3-1Q99801 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
NKX3-1Q99801 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX3-1Q99801 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.29■□□□□ 0.36
NKX3-1Q99801 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
NKX3-1Q99801 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX3-1Q99801 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
NKX3-1Q99801 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.29■□□□□ 0.36
NKX3-1Q99801 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX3-1Q99801 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.29■□□□□ 0.36
NKX3-1Q99801 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX3-1Q99801 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX3-1Q99801 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX3-1Q99801 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC17.29■□□□□ 0.36
NKX3-1Q99801 NTF6G-201ENST00000591094 616 ntBASIC17.29■□□□□ 0.36
NKX3-1Q99801 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
NKX3-1Q99801 TREX1-205ENST00000625293 1783 ntBASIC17.29■□□□□ 0.36
NKX3-1Q99801 AC005332.7-201ENST00000614046 2005 ntBASIC17.29■□□□□ 0.36
NKX3-1Q99801 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX3-1Q99801 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX3-1Q99801 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
NKX3-1Q99801 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC17.29■□□□□ 0.36
NKX3-1Q99801 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC17.29■□□□□ 0.36
NKX3-1Q99801 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX3-1Q99801 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC17.29■□□□□ 0.36
NKX3-1Q99801 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX3-1Q99801 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
NKX3-1Q99801 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC17.29■□□□□ 0.36
NKX3-1Q99801 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC17.29■□□□□ 0.36
NKX3-1Q99801 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
NKX3-1Q99801 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX3-1Q99801 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
NKX3-1Q99801 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.28■□□□□ 0.36
NKX3-1Q99801 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NKX3-1Q99801 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
NKX3-1Q99801 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
NKX3-1Q99801 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.28■□□□□ 0.36
NKX3-1Q99801 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.28■□□□□ 0.36
NKX3-1Q99801 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
NKX3-1Q99801 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NKX3-1Q99801 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC17.28■□□□□ 0.36
NKX3-1Q99801 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC17.28■□□□□ 0.36
NKX3-1Q99801 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC17.28■□□□□ 0.36
NKX3-1Q99801 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC17.28■□□□□ 0.36
NKX3-1Q99801 KRT18P20-201ENST00000548986 1279 ntBASIC17.28■□□□□ 0.36
NKX3-1Q99801 AC243732.1-201ENST00000612648 864 ntBASIC17.28■□□□□ 0.36
NKX3-1Q99801 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC17.28■□□□□ 0.36
NKX3-1Q99801 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC17.28■□□□□ 0.36
NKX3-1Q99801 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NKX3-1Q99801 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
NKX3-1Q99801 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NKX3-1Q99801 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.28■□□□□ 0.36
NKX3-1Q99801 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
NKX3-1Q99801 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NKX3-1Q99801 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
NKX3-1Q99801 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
NKX3-1Q99801 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NKX3-1Q99801 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
NKX3-1Q99801 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
NKX3-1Q99801 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms