Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 CRYGFP-201ENST00000418459 633 ntBASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 AC128688.1-201ENST00000487626 519 ntBASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 AC097488.1-201ENST00000507834 756 ntBASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 AP006587.1-201ENST00000534129 1502 ntBASIC20.43■□□□□ 0.86
SLC44A3Q8N4M1 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 INGX-201ENST00000359239 846 ntBASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 UPK3BP1-201ENST00000428678 509 ntBASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 WDR88-203ENST00000592765 651 ntTSL 5 BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 AL358472.4-201ENST00000633140 710 ntBASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC44A3Q8N4M1 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC44A3Q8N4M1 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC44A3Q8N4M1 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SLC44A3Q8N4M1 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
SLC44A3Q8N4M1 AC063952.2-201ENST00000498792 1227 ntBASIC20.41■□□□□ 0.86
SLC44A3Q8N4M1 AC022616.7-201ENST00000525383 220 ntBASIC20.41■□□□□ 0.86
SLC44A3Q8N4M1 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.41■□□□□ 0.86
SLC44A3Q8N4M1 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC20.41■□□□□ 0.86
SLC44A3Q8N4M1 AC091076.1-201ENST00000610741 619 ntBASIC20.41■□□□□ 0.86
SLC44A3Q8N4M1 KRT8P17-201ENST00000453110 1448 ntBASIC20.41■□□□□ 0.86
SLC44A3Q8N4M1 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.41■□□□□ 0.86
SLC44A3Q8N4M1 AC121338.2-201ENST00000622535 1744 ntBASIC20.41■□□□□ 0.86
SLC44A3Q8N4M1 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
SLC44A3Q8N4M1 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SLC44A3Q8N4M1 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SLC44A3Q8N4M1 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SLC44A3Q8N4M1 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SLC44A3Q8N4M1 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SLC44A3Q8N4M1 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.4■□□□□ 0.86
SLC44A3Q8N4M1 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SLC44A3Q8N4M1 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SLC44A3Q8N4M1 LINC01238-205ENST00000567549 1107 ntBASIC20.4■□□□□ 0.86
SLC44A3Q8N4M1 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.4■□□□□ 0.86
SLC44A3Q8N4M1 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
SLC44A3Q8N4M1 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.4■□□□□ 0.86
SLC44A3Q8N4M1 FAM87A-204ENST00000613235 858 ntBASIC20.4■□□□□ 0.86
SLC44A3Q8N4M1 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.4■□□□□ 0.86
SLC44A3Q8N4M1 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
SLC44A3Q8N4M1 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SLC44A3Q8N4M1 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SLC44A3Q8N4M1 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
SLC44A3Q8N4M1 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.86
SLC44A3Q8N4M1 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 AC004980.1-204ENST00000429707 299 ntBASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 AC233723.2-201ENST00000623798 2106 ntBASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 AC244015.2-201ENST00000616358 1861 ntBASIC20.39■□□□□ 0.85
SLC44A3Q8N4M1 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SLC44A3Q8N4M1 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SLC44A3Q8N4M1 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms