Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC27.14■■□□□ 1.94
NPHP3Q7Z494 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
NPHP3Q7Z494 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
NPHP3Q7Z494 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC27.14■■□□□ 1.94
NPHP3Q7Z494 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
NPHP3Q7Z494 RCC2P6-201ENST00000526625 1557 ntBASIC27.14■■□□□ 1.94
NPHP3Q7Z494 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.93
NPHP3Q7Z494 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
NPHP3Q7Z494 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC27.14■■□□□ 1.93
NPHP3Q7Z494 TUB-203ENST00000534099 1759 ntTSL 2 BASIC27.14■■□□□ 1.93
NPHP3Q7Z494 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC27.14■■□□□ 1.93
NPHP3Q7Z494 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
NPHP3Q7Z494 IPPK-202ENST00000375522 882 ntTSL 3 BASIC27.14■■□□□ 1.93
NPHP3Q7Z494 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC27.14■■□□□ 1.93
NPHP3Q7Z494 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC27.14■■□□□ 1.93
NPHP3Q7Z494 AL450487.1-201ENST00000426799 995 ntBASIC27.14■■□□□ 1.93
NPHP3Q7Z494 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC27.14■■□□□ 1.93
NPHP3Q7Z494 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
NPHP3Q7Z494 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC27.14■■□□□ 1.93
NPHP3Q7Z494 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC27.14■■□□□ 1.93
NPHP3Q7Z494 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC27.14■■□□□ 1.93
NPHP3Q7Z494 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC27.14■■□□□ 1.93
NPHP3Q7Z494 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC27.14■■□□□ 1.93
NPHP3Q7Z494 AC010653.2-201ENST00000623505 997 ntBASIC27.14■■□□□ 1.93
NPHP3Q7Z494 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC27.13■■□□□ 1.93
NPHP3Q7Z494 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC27.13■■□□□ 1.93
NPHP3Q7Z494 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
NPHP3Q7Z494 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
NPHP3Q7Z494 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC27.13■■□□□ 1.93
NPHP3Q7Z494 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC27.13■■□□□ 1.93
NPHP3Q7Z494 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
NPHP3Q7Z494 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC27.13■■□□□ 1.93
NPHP3Q7Z494 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC27.13■■□□□ 1.93
NPHP3Q7Z494 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
NPHP3Q7Z494 AC026396.1-201ENST00000419388 421 ntBASIC27.13■■□□□ 1.93
NPHP3Q7Z494 SLC25A1P2-201ENST00000430693 912 ntBASIC27.13■■□□□ 1.93
NPHP3Q7Z494 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
NPHP3Q7Z494 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC27.13■■□□□ 1.93
NPHP3Q7Z494 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC27.13■■□□□ 1.93
NPHP3Q7Z494 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC27.13■■□□□ 1.93
NPHP3Q7Z494 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC27.13■■□□□ 1.93
NPHP3Q7Z494 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
NPHP3Q7Z494 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
NPHP3Q7Z494 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC27.12■■□□□ 1.93
NPHP3Q7Z494 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
NPHP3Q7Z494 KRT8P17-201ENST00000453110 1448 ntBASIC27.12■■□□□ 1.93
NPHP3Q7Z494 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC27.12■■□□□ 1.93
NPHP3Q7Z494 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC27.12■■□□□ 1.93
NPHP3Q7Z494 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
NPHP3Q7Z494 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC27.12■■□□□ 1.93
NPHP3Q7Z494 CD70-202ENST00000423145 881 ntTSL 2 BASIC27.12■■□□□ 1.93
NPHP3Q7Z494 MFAP1P1-201ENST00000442257 1255 ntBASIC27.12■■□□□ 1.93
NPHP3Q7Z494 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC27.12■■□□□ 1.93
NPHP3Q7Z494 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC27.12■■□□□ 1.93
NPHP3Q7Z494 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
NPHP3Q7Z494 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC27.12■■□□□ 1.93
NPHP3Q7Z494 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC27.12■■□□□ 1.93
NPHP3Q7Z494 AC011298.2-201ENST00000617989 482 ntBASIC27.12■■□□□ 1.93
NPHP3Q7Z494 IER3-202ENST00000376377 1350 ntBASIC27.12■■□□□ 1.93
NPHP3Q7Z494 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC27.12■■□□□ 1.93
NPHP3Q7Z494 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
NPHP3Q7Z494 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
NPHP3Q7Z494 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
NPHP3Q7Z494 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
NPHP3Q7Z494 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC27.11■■□□□ 1.93
NPHP3Q7Z494 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC27.11■■□□□ 1.93
NPHP3Q7Z494 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC27.11■■□□□ 1.93
NPHP3Q7Z494 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC27.11■■□□□ 1.93
NPHP3Q7Z494 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
NPHP3Q7Z494 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC27.11■■□□□ 1.93
NPHP3Q7Z494 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
NPHP3Q7Z494 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
NPHP3Q7Z494 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC27.11■■□□□ 1.93
NPHP3Q7Z494 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC27.11■■□□□ 1.93
NPHP3Q7Z494 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
NPHP3Q7Z494 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC27.1■■□□□ 1.93
NPHP3Q7Z494 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
NPHP3Q7Z494 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC27.1■■□□□ 1.93
NPHP3Q7Z494 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
NPHP3Q7Z494 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC27.1■■□□□ 1.93
NPHP3Q7Z494 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
NPHP3Q7Z494 AC116351.2-201ENST00000606540 1585 ntBASIC27.1■■□□□ 1.93
NPHP3Q7Z494 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
NPHP3Q7Z494 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC27.1■■□□□ 1.93
NPHP3Q7Z494 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC27.1■■□□□ 1.93
NPHP3Q7Z494 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC27.1■■□□□ 1.93
NPHP3Q7Z494 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC27.1■■□□□ 1.93
NPHP3Q7Z494 AC141257.4-201ENST00000634557 245 ntBASIC27.1■■□□□ 1.93
NPHP3Q7Z494 AC136944.6-201ENST00000634818 245 ntBASIC27.1■■□□□ 1.93
NPHP3Q7Z494 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC27.1■■□□□ 1.93
NPHP3Q7Z494 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC27.09■■□□□ 1.93
NPHP3Q7Z494 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC27.09■■□□□ 1.93
NPHP3Q7Z494 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC27.09■■□□□ 1.93
NPHP3Q7Z494 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
NPHP3Q7Z494 TUBB8P6-201ENST00000436895 1288 ntBASIC27.09■■□□□ 1.93
NPHP3Q7Z494 AC007663.1-201ENST00000438948 1240 ntBASIC27.09■■□□□ 1.93
NPHP3Q7Z494 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC27.09■■□□□ 1.93
NPHP3Q7Z494 AC008040.2-201ENST00000461049 708 ntBASIC27.09■■□□□ 1.93
NPHP3Q7Z494 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC27.09■■□□□ 1.93
NPHP3Q7Z494 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC27.09■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms