Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 PRR31-201ENST00000371629 978 ntTSL 2 BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 FAM8A6P-201ENST00000407496 1135 ntBASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 LIN28AP1-201ENST00000429574 405 ntBASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 AP000593.1-201ENST00000393668 712 ntBASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 LINC01238-205ENST00000567549 1107 ntBASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 AP000550.4-202ENST00000639755 178 ntBASIC16.44■□□□□ 0.22
CSPG4Q6UVK1 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CSPG4Q6UVK1 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CSPG4Q6UVK1 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CSPG4Q6UVK1 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CSPG4Q6UVK1 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC16.43■□□□□ 0.22
CSPG4Q6UVK1 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CSPG4Q6UVK1 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC16.43■□□□□ 0.22
CSPG4Q6UVK1 RNF152P1-201ENST00000397754 604 ntBASIC16.43■□□□□ 0.22
CSPG4Q6UVK1 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.43■□□□□ 0.22
CSPG4Q6UVK1 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CSPG4Q6UVK1 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CSPG4Q6UVK1 AC023632.3-201ENST00000521633 145 ntBASIC16.43■□□□□ 0.22
CSPG4Q6UVK1 AP005242.2-201ENST00000580065 1175 ntBASIC16.43■□□□□ 0.22
CSPG4Q6UVK1 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CSPG4Q6UVK1 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CSPG4Q6UVK1 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CSPG4Q6UVK1 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CSPG4Q6UVK1 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CSPG4Q6UVK1 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 MESTP1-201ENST00000404287 994 ntBASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 FBXW4P1-201ENST00000426721 2239 ntBASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 AC023511.2-201ENST00000618803 211 ntBASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CSPG4Q6UVK1 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 AC009947.2-201ENST00000444014 672 ntBASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms