Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP39Q53GS9 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
USP39Q53GS9 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.22■□□□□ 0.83
USP39Q53GS9 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP39Q53GS9 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.22■□□□□ 0.83
USP39Q53GS9 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.22■□□□□ 0.83
USP39Q53GS9 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.22■□□□□ 0.83
USP39Q53GS9 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP39Q53GS9 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP39Q53GS9 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP39Q53GS9 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.22■□□□□ 0.83
USP39Q53GS9 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.22■□□□□ 0.83
USP39Q53GS9 AC023632.3-201ENST00000521633 145 ntBASIC20.22■□□□□ 0.83
USP39Q53GS9 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.22■□□□□ 0.83
USP39Q53GS9 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP39Q53GS9 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
USP39Q53GS9 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP39Q53GS9 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP39Q53GS9 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
USP39Q53GS9 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP39Q53GS9 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP39Q53GS9 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.22■□□□□ 0.83
USP39Q53GS9 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.22■□□□□ 0.83
USP39Q53GS9 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP39Q53GS9 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.21■□□□□ 0.83
USP39Q53GS9 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP39Q53GS9 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP39Q53GS9 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP39Q53GS9 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
USP39Q53GS9 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP39Q53GS9 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.21■□□□□ 0.83
USP39Q53GS9 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.21■□□□□ 0.83
USP39Q53GS9 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP39Q53GS9 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP39Q53GS9 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.21■□□□□ 0.83
USP39Q53GS9 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.21■□□□□ 0.83
USP39Q53GS9 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.21■□□□□ 0.83
USP39Q53GS9 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.21■□□□□ 0.83
USP39Q53GS9 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.21■□□□□ 0.83
USP39Q53GS9 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP39Q53GS9 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.21■□□□□ 0.83
USP39Q53GS9 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.21■□□□□ 0.83
USP39Q53GS9 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP39Q53GS9 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP39Q53GS9 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
USP39Q53GS9 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP39Q53GS9 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.21■□□□□ 0.83
USP39Q53GS9 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.21■□□□□ 0.83
USP39Q53GS9 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP39Q53GS9 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP39Q53GS9 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP39Q53GS9 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USP39Q53GS9 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
USP39Q53GS9 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.2■□□□□ 0.82
USP39Q53GS9 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP39Q53GS9 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP39Q53GS9 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP39Q53GS9 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP39Q53GS9 FAM197Y1-201ENST00000421178 764 ntBASIC20.2■□□□□ 0.82
USP39Q53GS9 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.2■□□□□ 0.82
USP39Q53GS9 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
USP39Q53GS9 AC073195.1-201ENST00000607241 877 ntBASIC20.2■□□□□ 0.82
USP39Q53GS9 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.2■□□□□ 0.82
USP39Q53GS9 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP39Q53GS9 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.2■□□□□ 0.82
USP39Q53GS9 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.2■□□□□ 0.82
USP39Q53GS9 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.2■□□□□ 0.82
USP39Q53GS9 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
USP39Q53GS9 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP39Q53GS9 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USP39Q53GS9 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP39Q53GS9 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.2■□□□□ 0.82
USP39Q53GS9 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP39Q53GS9 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
USP39Q53GS9 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP39Q53GS9 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP39Q53GS9 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USP39Q53GS9 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.19■□□□□ 0.82
USP39Q53GS9 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP39Q53GS9 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.19■□□□□ 0.82
USP39Q53GS9 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.19■□□□□ 0.82
USP39Q53GS9 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
USP39Q53GS9 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.19■□□□□ 0.82
USP39Q53GS9 AL445228.2-201ENST00000605589 952 ntBASIC20.19■□□□□ 0.82
USP39Q53GS9 AC004264.1-201ENST00000608354 794 ntBASIC20.19■□□□□ 0.82
USP39Q53GS9 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP39Q53GS9 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP39Q53GS9 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP39Q53GS9 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP39Q53GS9 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.19■□□□□ 0.82
USP39Q53GS9 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP39Q53GS9 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP39Q53GS9 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.18■□□□□ 0.82
USP39Q53GS9 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
USP39Q53GS9 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
USP39Q53GS9 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP39Q53GS9 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP39Q53GS9 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP39Q53GS9 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP39Q53GS9 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms