Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC27.71■■■□□ 2.03
MSH6P52701 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC27.71■■■□□ 2.03
MSH6P52701 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC27.71■■■□□ 2.03
MSH6P52701 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
MSH6P52701 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC27.71■■■□□ 2.03
MSH6P52701 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
MSH6P52701 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC27.71■■■□□ 2.03
MSH6P52701 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC27.71■■■□□ 2.03
MSH6P52701 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
MSH6P52701 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
MSH6P52701 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC27.71■■■□□ 2.03
MSH6P52701 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC27.7■■■□□ 2.03
MSH6P52701 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
MSH6P52701 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC27.7■■■□□ 2.03
MSH6P52701 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC27.7■■■□□ 2.03
MSH6P52701 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
MSH6P52701 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC27.7■■■□□ 2.03
MSH6P52701 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
MSH6P52701 AP006587.1-201ENST00000534129 1502 ntBASIC27.7■■■□□ 2.02
MSH6P52701 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
MSH6P52701 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
MSH6P52701 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
MSH6P52701 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC27.7■■■□□ 2.02
MSH6P52701 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC27.7■■■□□ 2.02
MSH6P52701 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
MSH6P52701 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC27.7■■■□□ 2.02
MSH6P52701 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC27.69■■■□□ 2.02
MSH6P52701 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
MSH6P52701 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC27.69■■■□□ 2.02
MSH6P52701 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC27.69■■■□□ 2.02
MSH6P52701 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
MSH6P52701 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC27.69■■■□□ 2.02
MSH6P52701 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
MSH6P52701 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
MSH6P52701 SLC25A1P2-201ENST00000430693 912 ntBASIC27.69■■■□□ 2.02
MSH6P52701 AL359075.1-203ENST00000462729 1002 ntBASIC27.69■■■□□ 2.02
MSH6P52701 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC27.69■■■□□ 2.02
MSH6P52701 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
MSH6P52701 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC27.69■■■□□ 2.02
MSH6P52701 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
MSH6P52701 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
MSH6P52701 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
MSH6P52701 AC096733.2-201ENST00000609937 1394 ntBASIC27.69■■■□□ 2.02
MSH6P52701 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC27.68■■■□□ 2.02
MSH6P52701 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC27.68■■■□□ 2.02
MSH6P52701 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC27.68■■■□□ 2.02
MSH6P52701 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC27.68■■■□□ 2.02
MSH6P52701 AC007663.1-201ENST00000438948 1240 ntBASIC27.68■■■□□ 2.02
MSH6P52701 MFAP1P1-201ENST00000442257 1255 ntBASIC27.68■■■□□ 2.02
MSH6P52701 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC27.68■■■□□ 2.02
MSH6P52701 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC27.68■■■□□ 2.02
MSH6P52701 AC130371.2-201ENST00000619443 611 ntBASIC27.68■■■□□ 2.02
MSH6P52701 AC012313.10-201ENST00000623509 926 ntBASIC27.68■■■□□ 2.02
MSH6P52701 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC27.68■■■□□ 2.02
MSH6P52701 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC27.68■■■□□ 2.02
MSH6P52701 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
MSH6P52701 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
MSH6P52701 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC27.67■■■□□ 2.02
MSH6P52701 DAP-202ENST00000432074 1048 ntTSL 2 BASIC27.67■■■□□ 2.02
MSH6P52701 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
MSH6P52701 CD81-212ENST00000526072 1172 ntTSL 5 BASIC27.67■■■□□ 2.02
MSH6P52701 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC27.67■■■□□ 2.02
MSH6P52701 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
MSH6P52701 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC27.67■■■□□ 2.02
MSH6P52701 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC27.67■■■□□ 2.02
MSH6P52701 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC27.67■■■□□ 2.02
MSH6P52701 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC27.67■■■□□ 2.02
MSH6P52701 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC27.67■■■□□ 2.02
MSH6P52701 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC27.67■■■□□ 2.02
MSH6P52701 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
MSH6P52701 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
MSH6P52701 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC27.66■■■□□ 2.02
MSH6P52701 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC27.66■■■□□ 2.02
MSH6P52701 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
MSH6P52701 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC27.66■■■□□ 2.02
MSH6P52701 RCC2P6-201ENST00000526625 1557 ntBASIC27.66■■■□□ 2.02
MSH6P52701 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC27.66■■■□□ 2.02
MSH6P52701 STAC-204ENST00000457375 1366 ntTSL 2 BASIC27.66■■■□□ 2.02
MSH6P52701 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
MSH6P52701 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC27.66■■■□□ 2.02
MSH6P52701 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
MSH6P52701 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
MSH6P52701 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC27.66■■■□□ 2.02
MSH6P52701 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC27.66■■■□□ 2.02
MSH6P52701 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
MSH6P52701 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC27.66■■■□□ 2.02
MSH6P52701 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC27.65■■■□□ 2.02
MSH6P52701 KRT8P20-201ENST00000423953 1409 ntBASIC27.65■■■□□ 2.02
MSH6P52701 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC27.65■■■□□ 2.02
MSH6P52701 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
MSH6P52701 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC27.65■■■□□ 2.02
MSH6P52701 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
MSH6P52701 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
MSH6P52701 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
MSH6P52701 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
MSH6P52701 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC27.64■■■□□ 2.02
MSH6P52701 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC27.64■■■□□ 2.02
MSH6P52701 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
MSH6P52701 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
MSH6P52701 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC27.64■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms