Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
USP11P51784 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC22.53■■□□□ 1.2
USP11P51784 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC22.53■■□□□ 1.2
USP11P51784 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
USP11P51784 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
USP11P51784 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
USP11P51784 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP11P51784 MOK-225ENST00000522867 1883 ntTSL 5 BASIC22.52■■□□□ 1.2
USP11P51784 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP11P51784 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
USP11P51784 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC22.52■■□□□ 1.2
USP11P51784 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC22.52■■□□□ 1.2
USP11P51784 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC22.52■■□□□ 1.2
USP11P51784 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC22.52■■□□□ 1.2
USP11P51784 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC22.52■■□□□ 1.2
USP11P51784 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
USP11P51784 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP11P51784 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP11P51784 AC018553.1-201ENST00000616682 1458 ntBASIC22.52■■□□□ 1.2
USP11P51784 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP11P51784 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
USP11P51784 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC22.52■■□□□ 1.2
USP11P51784 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP11P51784 TFP1-202ENST00000475455 1573 ntBASIC22.51■■□□□ 1.19
USP11P51784 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP11P51784 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
USP11P51784 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP11P51784 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC22.51■■□□□ 1.19
USP11P51784 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
USP11P51784 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP11P51784 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC22.51■■□□□ 1.19
USP11P51784 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
USP11P51784 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
USP11P51784 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC22.51■■□□□ 1.19
USP11P51784 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
USP11P51784 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP11P51784 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC22.51■■□□□ 1.19
USP11P51784 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP11P51784 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
USP11P51784 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
USP11P51784 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC22.5■■□□□ 1.19
USP11P51784 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP11P51784 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP11P51784 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
USP11P51784 GOLGA2P11-201ENST00000562660 1621 ntBASIC22.5■■□□□ 1.19
USP11P51784 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
USP11P51784 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC22.5■■□□□ 1.19
USP11P51784 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP11P51784 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC22.5■■□□□ 1.19
USP11P51784 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC22.5■■□□□ 1.19
USP11P51784 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC22.5■■□□□ 1.19
USP11P51784 PRKY-204ENST00000533551 1019 ntBASIC22.5■■□□□ 1.19
USP11P51784 PNN-205ENST00000556530 601 ntTSL 2 BASIC22.5■■□□□ 1.19
USP11P51784 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP11P51784 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP11P51784 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP11P51784 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP11P51784 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC22.5■■□□□ 1.19
USP11P51784 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP11P51784 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC22.5■■□□□ 1.19
USP11P51784 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC22.49■■□□□ 1.19
USP11P51784 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
USP11P51784 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC22.49■■□□□ 1.19
USP11P51784 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
USP11P51784 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
USP11P51784 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP11P51784 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP11P51784 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
USP11P51784 AC133681.1-201ENST00000465482 601 ntBASIC22.49■■□□□ 1.19
USP11P51784 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC22.49■■□□□ 1.19
USP11P51784 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP11P51784 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC22.49■■□□□ 1.19
USP11P51784 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP11P51784 AP001271.2-201ENST00000624018 1556 ntBASIC22.49■■□□□ 1.19
USP11P51784 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC22.49■■□□□ 1.19
USP11P51784 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
USP11P51784 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP11P51784 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
USP11P51784 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP11P51784 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
USP11P51784 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC22.48■■□□□ 1.19
USP11P51784 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP11P51784 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP11P51784 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
USP11P51784 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
USP11P51784 ISG20-202ENST00000379224 540 ntTSL 3 BASIC22.48■■□□□ 1.19
USP11P51784 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC22.48■■□□□ 1.19
USP11P51784 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC22.48■■□□□ 1.19
USP11P51784 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC22.48■■□□□ 1.19
USP11P51784 RPPH1-201ENST00000516869 333 ntBASIC22.48■■□□□ 1.19
USP11P51784 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC22.48■■□□□ 1.19
USP11P51784 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
USP11P51784 TCF3P1-201ENST00000423021 1937 ntBASIC22.48■■□□□ 1.19
USP11P51784 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
USP11P51784 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP11P51784 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC22.48■■□□□ 1.19
USP11P51784 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
USP11P51784 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC22.48■■□□□ 1.19
USP11P51784 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC22.48■■□□□ 1.19
USP11P51784 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms