Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.69■□□□□ 0.9
VCANP13611 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VCANP13611 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.69■□□□□ 0.9
VCANP13611 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
VCANP13611 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VCANP13611 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.69■□□□□ 0.9
VCANP13611 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.69■□□□□ 0.9
VCANP13611 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.69■□□□□ 0.9
VCANP13611 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
VCANP13611 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VCANP13611 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.68■□□□□ 0.9
VCANP13611 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VCANP13611 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VCANP13611 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.68■□□□□ 0.9
VCANP13611 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VCANP13611 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VCANP13611 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.68■□□□□ 0.9
VCANP13611 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VCANP13611 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.68■□□□□ 0.9
VCANP13611 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
VCANP13611 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
VCANP13611 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VCANP13611 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VCANP13611 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VCANP13611 AC027796.2-201ENST00000575326 344 ntBASIC20.68■□□□□ 0.9
VCANP13611 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VCANP13611 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VCANP13611 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VCANP13611 AL023803.3-201ENST00000615559 522 ntBASIC20.67■□□□□ 0.9
VCANP13611 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
VCANP13611 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VCANP13611 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VCANP13611 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
VCANP13611 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VCANP13611 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VCANP13611 SLC25A1P2-201ENST00000430693 912 ntBASIC20.67■□□□□ 0.9
VCANP13611 CCR12P-201ENST00000446203 998 ntBASIC20.67■□□□□ 0.9
VCANP13611 KRT18P38-201ENST00000449496 1282 ntBASIC20.67■□□□□ 0.9
VCANP13611 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC20.67■□□□□ 0.9
VCANP13611 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.67■□□□□ 0.9
VCANP13611 AC120114.3-201ENST00000611923 658 ntBASIC20.67■□□□□ 0.9
VCANP13611 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
VCANP13611 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
VCANP13611 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
VCANP13611 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.67■□□□□ 0.9
VCANP13611 AC004870.1-201ENST00000315132 882 ntBASIC20.66■□□□□ 0.9
VCANP13611 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VCANP13611 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VCANP13611 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
VCANP13611 AC004951.3-201ENST00000418645 1148 ntBASIC20.66■□□□□ 0.9
VCANP13611 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
VCANP13611 BX640515.1-201ENST00000617215 977 ntBASIC20.66■□□□□ 0.9
VCANP13611 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.66■□□□□ 0.9
VCANP13611 HLA-A-201ENST00000376802 1334 ntBASIC20.66■□□□□ 0.9
VCANP13611 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VCANP13611 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VCANP13611 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.66■□□□□ 0.9
VCANP13611 TSPY12P-201ENST00000421279 868 ntBASIC20.66■□□□□ 0.9
VCANP13611 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.66■□□□□ 0.9
VCANP13611 PRSS44-201ENST00000515154 1146 ntBASIC20.66■□□□□ 0.9
VCANP13611 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VCANP13611 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VCANP13611 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.66■□□□□ 0.9
VCANP13611 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
VCANP13611 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCANP13611 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC20.65■□□□□ 0.9
VCANP13611 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VCANP13611 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
VCANP13611 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.65■□□□□ 0.9
VCANP13611 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.65■□□□□ 0.9
VCANP13611 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCANP13611 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC20.65■□□□□ 0.9
VCANP13611 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC20.65■□□□□ 0.9
VCANP13611 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VCANP13611 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCANP13611 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.65■□□□□ 0.9
VCANP13611 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCANP13611 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCANP13611 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCANP13611 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCANP13611 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.65■□□□□ 0.9
VCANP13611 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.65■□□□□ 0.9
VCANP13611 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.64■□□□□ 0.9
VCANP13611 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
VCANP13611 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VCANP13611 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VCANP13611 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VCANP13611 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VCANP13611 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VCANP13611 KRT8P8-201ENST00000434750 1448 ntBASIC20.64■□□□□ 0.89
VCANP13611 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.64■□□□□ 0.89
VCANP13611 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VCANP13611 SPDYE13P-201ENST00000445314 798 ntBASIC20.64■□□□□ 0.89
VCANP13611 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.64■□□□□ 0.89
VCANP13611 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VCANP13611 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.64■□□□□ 0.89
VCANP13611 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VCANP13611 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VCANP13611 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCANP13611 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms