Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.94■□□□□ 0.78
VIMP08670 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
VIMP08670 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.94■□□□□ 0.78
VIMP08670 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.94■□□□□ 0.78
VIMP08670 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
VIMP08670 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.94■□□□□ 0.78
VIMP08670 AC053503.5-201ENST00000601508 636 ntBASIC19.94■□□□□ 0.78
VIMP08670 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.94■□□□□ 0.78
VIMP08670 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 AC011298.3-201ENST00000615796 283 ntBASIC19.94■□□□□ 0.78
VIMP08670 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.94■□□□□ 0.78
VIMP08670 AL035685.1-201ENST00000636663 812 ntBASIC19.94■□□□□ 0.78
VIMP08670 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.94■□□□□ 0.78
VIMP08670 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.94■□□□□ 0.78
VIMP08670 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VIMP08670 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.94■□□□□ 0.78
VIMP08670 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.93■□□□□ 0.78
VIMP08670 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
VIMP08670 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.93■□□□□ 0.78
VIMP08670 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
VIMP08670 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.93■□□□□ 0.78
VIMP08670 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
VIMP08670 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VIMP08670 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VIMP08670 DUX4L19-201ENST00000557448 1267 ntBASIC19.93■□□□□ 0.78
VIMP08670 MIR3621-201ENST00000580529 85 ntBASIC19.93■□□□□ 0.78
VIMP08670 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC19.93■□□□□ 0.78
VIMP08670 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VIMP08670 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VIMP08670 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VIMP08670 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.93■□□□□ 0.78
VIMP08670 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VIMP08670 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VIMP08670 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
VIMP08670 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VIMP08670 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VIMP08670 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
VIMP08670 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.92■□□□□ 0.78
VIMP08670 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
VIMP08670 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VIMP08670 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.92■□□□□ 0.78
VIMP08670 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
VIMP08670 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
VIMP08670 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
VIMP08670 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VIMP08670 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
VIMP08670 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.92■□□□□ 0.78
VIMP08670 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.92■□□□□ 0.78
VIMP08670 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
VIMP08670 EEF1DP3-203ENST00000566025 782 ntBASIC19.92■□□□□ 0.78
VIMP08670 AC133561.4-201ENST00000566112 224 ntBASIC19.92■□□□□ 0.78
VIMP08670 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VIMP08670 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
VIMP08670 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.92■□□□□ 0.78
VIMP08670 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VIMP08670 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
VIMP08670 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VIMP08670 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VIMP08670 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
VIMP08670 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.92■□□□□ 0.78
VIMP08670 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VIMP08670 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.92■□□□□ 0.78
VIMP08670 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
VIMP08670 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.91■□□□□ 0.78
VIMP08670 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VIMP08670 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VIMP08670 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VIMP08670 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.91■□□□□ 0.78
VIMP08670 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.91■□□□□ 0.78
VIMP08670 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
VIMP08670 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.91■□□□□ 0.78
VIMP08670 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
VIMP08670 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
VIMP08670 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VIMP08670 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VIMP08670 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.91■□□□□ 0.78
VIMP08670 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VIMP08670 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.91■□□□□ 0.78
VIMP08670 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.91■□□□□ 0.78
VIMP08670 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VIMP08670 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VIMP08670 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VIMP08670 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VIMP08670 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VIMP08670 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
VIMP08670 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VIMP08670 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms