Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.47■□□□□ 0.39
LMX1BO60663 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1BO60663 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC17.47■□□□□ 0.39
LMX1BO60663 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1BO60663 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
LMX1BO60663 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1BO60663 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1BO60663 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
LMX1BO60663 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1BO60663 STK25-205ENST00000405883 1904 ntTSL 2 BASIC17.47■□□□□ 0.39
LMX1BO60663 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1BO60663 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1BO60663 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
LMX1BO60663 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1BO60663 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.46■□□□□ 0.39
LMX1BO60663 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1BO60663 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1BO60663 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1BO60663 PRORSD1P-201ENST00000295112 541 ntBASIC17.46■□□□□ 0.39
LMX1BO60663 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1BO60663 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1BO60663 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
LMX1BO60663 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.46■□□□□ 0.39
LMX1BO60663 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.46■□□□□ 0.39
LMX1BO60663 CDV3P1-201ENST00000471403 739 ntBASIC17.46■□□□□ 0.39
LMX1BO60663 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1BO60663 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.46■□□□□ 0.39
LMX1BO60663 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1BO60663 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
LMX1BO60663 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.46■□□□□ 0.39
LMX1BO60663 AP006294.2-201ENST00000641667 209 ntBASIC17.46■□□□□ 0.39
LMX1BO60663 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.46■□□□□ 0.39
LMX1BO60663 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1BO60663 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.46■□□□□ 0.39
LMX1BO60663 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1BO60663 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1BO60663 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
LMX1BO60663 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1BO60663 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.45■□□□□ 0.38
LMX1BO60663 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1BO60663 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1BO60663 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1BO60663 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
LMX1BO60663 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1BO60663 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1BO60663 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.45■□□□□ 0.38
LMX1BO60663 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
LMX1BO60663 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC17.45■□□□□ 0.38
LMX1BO60663 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1BO60663 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1BO60663 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1BO60663 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1BO60663 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1BO60663 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.45■□□□□ 0.38
LMX1BO60663 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
LMX1BO60663 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.45■□□□□ 0.38
LMX1BO60663 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.45■□□□□ 0.38
LMX1BO60663 AC016405.3-201ENST00000607710 860 ntBASIC17.45■□□□□ 0.38
LMX1BO60663 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1BO60663 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.45■□□□□ 0.38
LMX1BO60663 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1BO60663 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.45■□□□□ 0.38
LMX1BO60663 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC17.45■□□□□ 0.38
LMX1BO60663 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.45■□□□□ 0.38
LMX1BO60663 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
LMX1BO60663 RNF165-205ENST00000588679 2904 ntBASIC17.44■□□□□ 0.38
LMX1BO60663 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1BO60663 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LMX1BO60663 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LMX1BO60663 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1BO60663 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1BO60663 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1BO60663 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1BO60663 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.44■□□□□ 0.38
LMX1BO60663 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1BO60663 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1BO60663 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.44■□□□□ 0.38
LMX1BO60663 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LMX1BO60663 BX276092.2-201ENST00000417668 665 ntBASIC17.44■□□□□ 0.38
LMX1BO60663 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.44■□□□□ 0.38
LMX1BO60663 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LMX1BO60663 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.44■□□□□ 0.38
LMX1BO60663 AC097658.1-201ENST00000475555 843 ntBASIC17.44■□□□□ 0.38
LMX1BO60663 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC17.44■□□□□ 0.38
LMX1BO60663 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC17.44■□□□□ 0.38
LMX1BO60663 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.44■□□□□ 0.38
LMX1BO60663 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC17.44■□□□□ 0.38
LMX1BO60663 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC17.44■□□□□ 0.38
LMX1BO60663 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.44■□□□□ 0.38
LMX1BO60663 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1BO60663 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1BO60663 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC17.44■□□□□ 0.38
LMX1BO60663 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LMX1BO60663 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1BO60663 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1BO60663 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LMX1BO60663 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1BO60663 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1BO60663 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.44■□□□□ 0.38
LMX1BO60663 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms