Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.21■□□□□ 0.19
SSSCA1O60232 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSSCA1O60232 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
SSSCA1O60232 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSSCA1O60232 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC16.2■□□□□ 0.18
SSSCA1O60232 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC16.2■□□□□ 0.18
SSSCA1O60232 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SSSCA1O60232 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC16.2■□□□□ 0.18
SSSCA1O60232 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
SSSCA1O60232 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC16.2■□□□□ 0.18
SSSCA1O60232 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 TRIR-205ENST00000592273 783 ntTSL 3 BASIC16.2■□□□□ 0.18
SSSCA1O60232 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC16.2■□□□□ 0.18
SSSCA1O60232 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC16.2■□□□□ 0.18
SSSCA1O60232 MOK-225ENST00000522867 1883 ntTSL 5 BASIC16.2■□□□□ 0.18
SSSCA1O60232 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
SSSCA1O60232 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSSCA1O60232 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 STK25-204ENST00000405585 1643 ntTSL 2 BASIC16.19■□□□□ 0.18
SSSCA1O60232 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
SSSCA1O60232 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.19■□□□□ 0.18
SSSCA1O60232 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC16.19■□□□□ 0.18
SSSCA1O60232 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 UNC93B3-201ENST00000308076 687 ntBASIC16.19■□□□□ 0.18
SSSCA1O60232 AC026471.1-201ENST00000564629 3026 ntBASIC16.19■□□□□ 0.18
SSSCA1O60232 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
SSSCA1O60232 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.19■□□□□ 0.18
SSSCA1O60232 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSSCA1O60232 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SSSCA1O60232 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSSCA1O60232 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC16.18■□□□□ 0.18
SSSCA1O60232 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SSSCA1O60232 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC16.18■□□□□ 0.18
SSSCA1O60232 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
SSSCA1O60232 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SSSCA1O60232 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC16.18■□□□□ 0.18
SSSCA1O60232 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC16.18■□□□□ 0.18
SSSCA1O60232 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSSCA1O60232 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SSSCA1O60232 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC16.18■□□□□ 0.18
SSSCA1O60232 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSSCA1O60232 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
SSSCA1O60232 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSSCA1O60232 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSSCA1O60232 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SSSCA1O60232 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC16.18■□□□□ 0.18
SSSCA1O60232 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SSSCA1O60232 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC16.18■□□□□ 0.18
SSSCA1O60232 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSSCA1O60232 AC099791.1-201ENST00000416440 715 ntBASIC16.18■□□□□ 0.18
SSSCA1O60232 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SSSCA1O60232 AC024257.2-201ENST00000549699 147 ntBASIC16.18■□□□□ 0.18
SSSCA1O60232 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC16.18■□□□□ 0.18
SSSCA1O60232 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC16.18■□□□□ 0.18
SSSCA1O60232 MPST-208ENST00000628507 698 ntTSL 5 BASIC16.18■□□□□ 0.18
SSSCA1O60232 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSSCA1O60232 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC16.18■□□□□ 0.18
SSSCA1O60232 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SSSCA1O60232 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSSCA1O60232 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSSCA1O60232 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.18■□□□□ 0.18
SSSCA1O60232 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SSSCA1O60232 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSSCA1O60232 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SSSCA1O60232 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSSCA1O60232 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SSSCA1O60232 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms