Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX4O14627 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CDX4O14627 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX4O14627 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDX4O14627 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX4O14627 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.28■□□□□ 0.68
CDX4O14627 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.28■□□□□ 0.68
CDX4O14627 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.28■□□□□ 0.68
CDX4O14627 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.28■□□□□ 0.68
CDX4O14627 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.28■□□□□ 0.68
CDX4O14627 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.28■□□□□ 0.68
CDX4O14627 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.28■□□□□ 0.68
CDX4O14627 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.28■□□□□ 0.68
CDX4O14627 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX4O14627 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDX4O14627 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX4O14627 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CDX4O14627 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX4O14627 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX4O14627 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CDX4O14627 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX4O14627 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.27■□□□□ 0.68
CDX4O14627 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.27■□□□□ 0.68
CDX4O14627 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.27■□□□□ 0.68
CDX4O14627 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
CDX4O14627 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
CDX4O14627 AC008040.2-201ENST00000461049 708 ntBASIC19.27■□□□□ 0.68
CDX4O14627 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.27■□□□□ 0.68
CDX4O14627 AC011558.1-201ENST00000623459 338 ntBASIC19.27■□□□□ 0.68
CDX4O14627 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CDX4O14627 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CDX4O14627 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.67
CDX4O14627 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
CDX4O14627 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDX4O14627 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDX4O14627 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CDX4O14627 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.26■□□□□ 0.67
CDX4O14627 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
CDX4O14627 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDX4O14627 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.26■□□□□ 0.67
CDX4O14627 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.26■□□□□ 0.67
CDX4O14627 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC19.26■□□□□ 0.67
CDX4O14627 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.26■□□□□ 0.67
CDX4O14627 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDX4O14627 IER3-202ENST00000376377 1350 ntBASIC19.26■□□□□ 0.67
CDX4O14627 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDX4O14627 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDX4O14627 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CDX4O14627 KRT8P17-201ENST00000453110 1448 ntBASIC19.25■□□□□ 0.67
CDX4O14627 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CDX4O14627 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDX4O14627 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
CDX4O14627 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDX4O14627 RCC2P6-201ENST00000526625 1557 ntBASIC19.25■□□□□ 0.67
CDX4O14627 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDX4O14627 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDX4O14627 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CDX4O14627 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.25■□□□□ 0.67
CDX4O14627 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CDX4O14627 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDX4O14627 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDX4O14627 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDX4O14627 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.25■□□□□ 0.67
CDX4O14627 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.25■□□□□ 0.67
CDX4O14627 CCR12P-201ENST00000446203 998 ntBASIC19.25■□□□□ 0.67
CDX4O14627 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDX4O14627 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.25■□□□□ 0.67
CDX4O14627 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.25■□□□□ 0.67
CDX4O14627 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDX4O14627 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.25■□□□□ 0.67
CDX4O14627 AC093458.2-201ENST00000623150 629 ntBASIC19.25■□□□□ 0.67
CDX4O14627 AC141257.4-201ENST00000634557 245 ntBASIC19.25■□□□□ 0.67
CDX4O14627 AC136944.6-201ENST00000634818 245 ntBASIC19.25■□□□□ 0.67
CDX4O14627 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.25■□□□□ 0.67
CDX4O14627 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDX4O14627 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.25■□□□□ 0.67
CDX4O14627 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDX4O14627 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CDX4O14627 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX4O14627 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.24■□□□□ 0.67
CDX4O14627 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.24■□□□□ 0.67
CDX4O14627 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX4O14627 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDX4O14627 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CDX4O14627 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CDX4O14627 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX4O14627 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CDX4O14627 SLC25A1P2-201ENST00000430693 912 ntBASIC19.24■□□□□ 0.67
CDX4O14627 AC007663.1-201ENST00000438948 1240 ntBASIC19.24■□□□□ 0.67
CDX4O14627 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDX4O14627 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDX4O14627 MFAP1P1-201ENST00000442257 1255 ntBASIC19.24■□□□□ 0.67
CDX4O14627 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CDX4O14627 KRT18P16-201ENST00000510337 1294 ntBASIC19.24■□□□□ 0.67
CDX4O14627 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.24■□□□□ 0.67
CDX4O14627 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
CDX4O14627 AC011298.2-201ENST00000617989 482 ntBASIC19.24■□□□□ 0.67
CDX4O14627 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX4O14627 AC010653.2-201ENST00000623505 997 ntBASIC19.24■□□□□ 0.67
CDX4O14627 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms