Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SLC28A1O00337 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SLC28A1O00337 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SLC28A1O00337 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.14■□□□□ 0.65
SLC28A1O00337 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SLC28A1O00337 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.14■□□□□ 0.65
SLC28A1O00337 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SLC28A1O00337 AC007322.1-201ENST00000426983 750 ntBASIC19.14■□□□□ 0.65
SLC28A1O00337 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.14■□□□□ 0.65
SLC28A1O00337 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SLC28A1O00337 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.14■□□□□ 0.65
SLC28A1O00337 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.14■□□□□ 0.65
SLC28A1O00337 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SLC28A1O00337 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SLC28A1O00337 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SLC28A1O00337 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SLC28A1O00337 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.14■□□□□ 0.65
SLC28A1O00337 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.14■□□□□ 0.65
SLC28A1O00337 AP001271.2-201ENST00000624018 1556 ntBASIC19.14■□□□□ 0.65
SLC28A1O00337 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SLC28A1O00337 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SLC28A1O00337 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SLC28A1O00337 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SLC28A1O00337 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SLC28A1O00337 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.13■□□□□ 0.65
SLC28A1O00337 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SLC28A1O00337 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.13■□□□□ 0.65
SLC28A1O00337 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.13■□□□□ 0.65
SLC28A1O00337 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SLC28A1O00337 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SLC28A1O00337 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SLC28A1O00337 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SLC28A1O00337 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SLC28A1O00337 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
SLC28A1O00337 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.13■□□□□ 0.65
SLC28A1O00337 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.13■□□□□ 0.65
SLC28A1O00337 AC026271.2-201ENST00000428091 497 ntBASIC19.13■□□□□ 0.65
SLC28A1O00337 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SLC28A1O00337 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.13■□□□□ 0.65
SLC28A1O00337 AL589743.5-201ENST00000616611 1050 ntBASIC19.13■□□□□ 0.65
SLC28A1O00337 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SLC28A1O00337 OR10C1-204ENST00000622521 1039 ntBASIC19.13■□□□□ 0.65
SLC28A1O00337 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SLC28A1O00337 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SLC28A1O00337 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SLC28A1O00337 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SLC28A1O00337 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.13■□□□□ 0.65
SLC28A1O00337 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.13■□□□□ 0.65
SLC28A1O00337 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC28A1O00337 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
SLC28A1O00337 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.12■□□□□ 0.65
SLC28A1O00337 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC28A1O00337 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SLC28A1O00337 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC28A1O00337 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC28A1O00337 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC28A1O00337 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.12■□□□□ 0.65
SLC28A1O00337 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC28A1O00337 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SLC28A1O00337 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.12■□□□□ 0.65
SLC28A1O00337 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC28A1O00337 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC28A1O00337 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SLC28A1O00337 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC28A1O00337 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC28A1O00337 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.12■□□□□ 0.65
SLC28A1O00337 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC28A1O00337 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC28A1O00337 AL355472.2-201ENST00000422958 438 ntBASIC19.12■□□□□ 0.65
SLC28A1O00337 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.12■□□□□ 0.65
SLC28A1O00337 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC28A1O00337 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.12■□□□□ 0.65
SLC28A1O00337 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.12■□□□□ 0.65
SLC28A1O00337 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.12■□□□□ 0.65
SLC28A1O00337 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.12■□□□□ 0.65
SLC28A1O00337 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
SLC28A1O00337 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC28A1O00337 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC28A1O00337 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SLC28A1O00337 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SLC28A1O00337 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SLC28A1O00337 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
SLC28A1O00337 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.11■□□□□ 0.65
SLC28A1O00337 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SLC28A1O00337 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SLC28A1O00337 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
SLC28A1O00337 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SLC28A1O00337 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SLC28A1O00337 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SLC28A1O00337 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.11■□□□□ 0.65
SLC28A1O00337 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SLC28A1O00337 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SLC28A1O00337 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SLC28A1O00337 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SLC28A1O00337 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SLC28A1O00337 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SLC28A1O00337 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.11■□□□□ 0.65
SLC28A1O00337 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.11■□□□□ 0.65
SLC28A1O00337 RARRES2P6-201ENST00000567333 442 ntBASIC19.11■□□□□ 0.65
SLC28A1O00337 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms