Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL6A6A6NMZ7 AC096733.2-201ENST00000609937 1394 ntBASIC18.02■□□□□ 0.48
COL6A6A6NMZ7 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL6A6A6NMZ7 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.02■□□□□ 0.48
COL6A6A6NMZ7 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC18.02■□□□□ 0.48
COL6A6A6NMZ7 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL6A6A6NMZ7 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.02■□□□□ 0.47
COL6A6A6NMZ7 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.02■□□□□ 0.47
COL6A6A6NMZ7 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.02■□□□□ 0.47
COL6A6A6NMZ7 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL6A6A6NMZ7 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL6A6A6NMZ7 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL6A6A6NMZ7 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
COL6A6A6NMZ7 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.01■□□□□ 0.47
COL6A6A6NMZ7 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A6A6NMZ7 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A6A6NMZ7 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A6A6NMZ7 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.01■□□□□ 0.47
COL6A6A6NMZ7 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
COL6A6A6NMZ7 AL136038.3-201ENST00000561909 1096 ntBASIC18.01■□□□□ 0.47
COL6A6A6NMZ7 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.01■□□□□ 0.47
COL6A6A6NMZ7 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.01■□□□□ 0.47
COL6A6A6NMZ7 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A6A6NMZ7 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.01■□□□□ 0.47
COL6A6A6NMZ7 AC116562.4-202ENST00000641738 218 ntBASIC18.01■□□□□ 0.47
COL6A6A6NMZ7 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC18■□□□□ 0.47
COL6A6A6NMZ7 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL6A6A6NMZ7 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18■□□□□ 0.47
COL6A6A6NMZ7 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18■□□□□ 0.47
COL6A6A6NMZ7 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18■□□□□ 0.47
COL6A6A6NMZ7 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18■□□□□ 0.47
COL6A6A6NMZ7 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL6A6A6NMZ7 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
COL6A6A6NMZ7 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC18■□□□□ 0.47
COL6A6A6NMZ7 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
COL6A6A6NMZ7 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18■□□□□ 0.47
COL6A6A6NMZ7 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL6A6A6NMZ7 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18■□□□□ 0.47
COL6A6A6NMZ7 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A6A6NMZ7 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A6A6NMZ7 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A6A6NMZ7 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A6A6NMZ7 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.99■□□□□ 0.47
COL6A6A6NMZ7 ATP5G2P1-201ENST00000433580 426 ntBASIC17.99■□□□□ 0.47
COL6A6A6NMZ7 AC141257.4-201ENST00000634557 245 ntBASIC17.99■□□□□ 0.47
COL6A6A6NMZ7 AC136944.6-201ENST00000634818 245 ntBASIC17.99■□□□□ 0.47
COL6A6A6NMZ7 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A6A6NMZ7 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A6A6NMZ7 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A6A6NMZ7 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A6A6NMZ7 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC17.99■□□□□ 0.47
COL6A6A6NMZ7 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A6A6NMZ7 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC17.99■□□□□ 0.47
COL6A6A6NMZ7 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC17.99■□□□□ 0.47
COL6A6A6NMZ7 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A6A6NMZ7 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 CCR12P-201ENST00000446203 998 ntBASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 AP000692.2-201ENST00000608391 879 ntBASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 AC139530.3-201ENST00000620344 690 ntBASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.98■□□□□ 0.47
COL6A6A6NMZ7 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 AL022342.1-201ENST00000400363 863 ntBASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 AL671883.3-201ENST00000603274 991 ntBASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 C1orf229-201ENST00000623686 2258 ntBASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 MIR3652-201ENST00000579335 131 ntBASIC17.97■□□□□ 0.47
COL6A6A6NMZ7 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms